Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00797 ATGGTAGGAAAAAGGAAGTATTTGCATCAATCCAAGCATCCATTCAATGCTTACCCCTTTGAAGCATGTGTGTATGGTTCATGGAAAGCGGTGGAGTTCATAAAAATTGAGTATGGAGTTATGTCCATACATTTCATTGATAAACGCCATATTTCTATGGAAAAAGGCCCCTCTGCAGACGTTCGGATAAGGTCGAGAATAGCTACTACTGCAGATTGCTCCTGCATTTTACGACGGGGAATTGACGTATGTGTGCTATCATCTCCTCAAGGAACTGGTGATTCGGATGAATTTGATGCTCGCGAGCCTGTTTGGAGAGATGCTAGAATTAGTTCTATACAGAGAAAGCCCCATGATTCTGAGTGCACATGCCAATTTTATGTCAACTACTATGTTAATCAAGGTTCGCTTGGTGCAGAGATGAAAACGCTTAACAAGGATATTAATGTGGTTGGATTAGATCATATCTTCATCCTCCAAAGGCTTGAACATACACATTGTGATGAAGATCAGCACTATCGGTGGACTTCAACAGAGGACTGCTCTAGAATACCACAAACTAGATTGCTGTTGGGGAAATTTTTACCTGATATTTCGTGGTTGATCGCGACATCTGTTTTAAAGAAGGTTTCTTTCTTTATAAGATCTGTGGAAAACAAGCTTGTTTATGAAGTTCTGTCAAATGACATTGTTATCCCCCCGTTCCATACCGAGTCTCATATAAATGTTGTAAACTTCAAACTGGAGAAAGACATGCTAATACCTATTGTTTCTCAAGTTATTGTATCCAGAACTGAGAGGGTTGACTATGAACATCAAGAATCCCATGAAGATGAAGTGTCACCATCATCATATAATGTTCAAGGCTTACGGCGTTCCAAGCGTCGACATGTACAACCTGACCGTTACCTTGGTTGCAATAGTGCTCCTGAGCTCAATATTGGTACTATTAGAACAAGGCCATACAAATTAGGCACATGGGAACAAGTTGATGAAGATCATGAACTGTCAATGCCATTATCTTCCCTGTTTGGATTGAAACAAATCAGTCAAGATCAGGATCTTGATAGTAGTCCTAAGGAGAGCAAGGTGAATGGTTGCCAGGAGATTATAGTTTACAATAGGAGGGCTAAAGCCAAGGAGGCGAAGCCAGGCGATGCTGATCGAGACATACAGCTCAATGAACTCGCTATTATTCCTCATCCTACTCTTAAACATCATAAGCTCAATGACATGACTTGTAGAATTGGCAAACATGAACCAGACGAAACTCCTTCGAAATATAGTCATCTGGTTAATAGCACTAAGCAGAAAAGGAATAGTGTCAATCTGTTGAATTTCAATCCAGATAATGTGCTTGCGCAGTTAGAGGAGGTGGAGAAAAGTGATGGTTTTTCTTCAAGATGTCATTATACTTATAGTTACAGCACCTCCAAGTTTCAGAGGAAGGCTTTAAGAGATCTTGATGATATGAATCTGGCACCAAAATGGGAAGGCATACATTCCAGTAAGGGAGCTCAAGATAGAAGGTACCGTCCGGCATTTTCGAGAAATAGACATCCTGATGAAGAAAGAACTTATAAAGACAGAACATTGAATGCCACAGCCTACAAGGAGTTGATAAATTCCTACTTAAAGAATATTAACACGAAACCAACGAAAGAAGAAATGCCTATTAGTGACCAGTGGAAGCAGTTCCAGGATTCACGCAGTGTCGGGAAAACGAAGGAAATAAAAATATCCAATACCGATTATGCAGAAGATACCTCTGAGTTGGATAGTTTGTGGAGAGAAATGGAAGTGTCTCTGGCATCAAGTTACATTGAAGACACAGAGGATGCGAATGCAGCCAATCTTTTCGACACTCAGGAAATATCAAAGGAAGCTTGTGAACATTACTTTAGATTGGATGATGAAATTGGAATTTGCTGCTTGAAATGTGGCTTTGTGGAGATGGACATTAAAGCTATCACACCAGCCTTTATTCAACATTCAGTGTGGCACCAAGAGGAGAGGCAGAACGTCGGCAAAGAAGATGCAGAATCGAAGGCTGCTGAATTTGAAGATTTCAATCTTGTCTCAAATGTTGAGAATGAAGATGAACCTGTATTGGTGGAACATGATAATGTATGGGCATTAATTCCGGATCTTCGAAAGAAGTTGCACATCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGAGAAACATTGCCGGGTCTACAGAACCAGCACTTATGGACAAGAACTCCAGAAAAAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCCGGAAAAACTTTCCTGATTATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCGGGAAAGAAACCTCTAGTCCTTGCACCAAAAACAACACTTTATACCTGGTATAAAGAATTTATCAAGTGGGAGATTCCAATACCGGTGTATCTAATTCATGGTCGAAGAACCTACAGGGTATTCAACCAGAAACAATCAATGGTTTTTCCCGGAATGCCAAAGCCCACGGAGGATGTCAAGCATGTTTTAGATTGCCTAGAGAAAATACAGAAGTGGCATTCACACCCAAGTGTTCTAATCATGGGATATACTTCATTTTTGACATTGATGCGAGAGGATTCAAAGTATGCACATAGAAAGTATATGGCTAAAGTTCTGAGGGAAAGTCCCGGACTCCTAGTATTGGATGAAGGGCACAATCCGAGAAGCACCAAGTCCAGGTTGAGGAAAGTTTTGATGAAGGTACAAACAGAATTGAGAATACTGCTGTCTGGTACATTGTTTCAGAACAATTTCTGTGAATACTTCAACACACTCTTGTTGGCAAGACCAAAGTTTGCACATGAGGTGCTGAAAGTTTTAGACCCGAAATACAAGAAGAAGAAAGGAAAAGTGAGGGCAGTGGAGTACCGGGCAAGGAAATTCTTCATAGAAGTGATCTCTAGGAAAATCGACTCGAACAATGGCGAGGAGAGGATGCAAGGTCTTAACATGTTGAGAAATTTAACAAATGGTTTTATAGATGTTTATGAAGGTAGTAGCTCGGACGACCTACCCGGTTTGCAAATTTATACTTTGTTGATGAACACAACCGATACGCAGCATGAGATGTTGAAGAGACTGCACAAGAAAATGCAAAAGTGCAATGGATATCCTCTGGAGTTAGAGCTTTTGATAACTCTTGGGTCCATACATCCTTGGTTGATCAAAACTGCTGTATGTGCTAACAAGTTTTTCACAATGGAGGAACTGAGGGAGCTAGAGAAATGCAAGTTTGATTTGAAGATGGGGTCTAAGGTAAAATTTGTTATGAGCCTTATCTACCGCGTGGTCCAGAAGGAGAAGATCCTCATTTTCTGCCACAACATTGCACCAGTGAAGTTATTTATAGAATATTTTGAGTTGTTCTTCAAATGGCAAAAAGGGCGGGAAATTCTGGTGTTAACCGGGGAGCTAGAGCTCTTCGAGCGCGGCAGAGTGATGGATAAGTTTGAGGAACCTGGTGGAGTTTCAAAGATACTCCTTGCTTCGATTACAGCTTGTGCCGAAGGCATTAGTTTGACGGCAGCTTCTCGGGTGATCATGCTGGATTCCGAGTGGAATCCGTCGAAAACAAAGCAGGCCATCGCAAGGGCTTTTCGTCCCGGCCAGCAGAAAATGGTTTATGTGTATCAGCTCCTGGTAACCGGTTCGTTGGAGGAAGATAAGTACCGAAGAACCACATGGAAAGAGGGGGTGTCAAGCATGATTTTCAGTGAGGAGTTTGTGGAGGATCCTTCCCAATGGCAAGCTCAGAAGATTGAAGATGAAATCCTGAGGGAAATGGTTGAGGAGGACAAGTCCAAGTCATTCCATATGATTATGAAGAATGAAAAGGCTTCAACAAACAACAGATAA 3900 0.4128 MVGKRKYLHQSKHPFNAYPFEACVYGSWKAVEFIKIEYGVMSIHFIDKRHISMEKGPSADVRIRSRIATTADCSCILRRGIDVCVLSSPQGTGDSDEFDAREPVWRDARISSIQRKPHDSECTCQFYVNYYVNQGSLGAEMKTLNKDINVVGLDHIFILQRLEHTHCDEDQHYRWTSTEDCSRIPQTRLLLGKFLPDISWLIATSVLKKVSFFIRSVENKLVYEVLSNDIVIPPFHTESHINVVNFKLEKDMLIPIVSQVIVSRTERVDYEHQESHEDEVSPSSYNVQGLRRSKRRHVQPDRYLGCNSAPELNIGTIRTRPYKLGTWEQVDEDHELSMPLSSLFGLKQISQDQDLDSSPKESKVNGCQEIIVYNRRAKAKEAKPGDADRDIQLNELAIIPHPTLKHHKLNDMTCRIGKHEPDETPSKYSHLVNSTKQKRNSVNLLNFNPDNVLAQLEEVEKSDGFSSRCHYTYSYSTSKFQRKALRDLDDMNLAPKWEGIHSSKGAQDRRYRPAFSRNRHPDEERTYKDRTLNATAYKELINSYLKNINTKPTKEEMPISDQWKQFQDSRSVGKTKEIKISNTDYAEDTSELDSLWREMEVSLASSYIEDTEDANAANLFDTQEISKEACEHYFRLDDEIGICCLKCGFVEMDIKAITPAFIQHSVWHQEERQNVGKEDAESKAAEFEDFNLVSNVENEDEPVLVEHDNVWALIPDLRKKLHIHQKKAFEFLWRNIAGSTEPALMDKNSRKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKKPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFNQKQSMVFPGMPKPTEDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKYAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLLLARPKFAHEVLKVLDPKYKKKKGKVRAVEYRARKFFIEVISRKIDSNNGEERMQGLNMLRNLTNGFIDVYEGSSSDDLPGLQIYTLLMNTTDTQHEMLKRLHKKMQKCNGYPLELELLITLGSIHPWLIKTAVCANKFFTMEELRELEKCKFDLKMGSKVKFVMSLIYRVVQKEKILIFCHNIAPVKLFIEYFELFFKWQKGREILVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEGVSSMIFSEEFVEDPSQWQAQKIEDEILREMVEEDKSKSFHMIMKNEKASTNNR 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00797 1299 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1103 1288 IPR001650 -
Aip07g00797 1299 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 21 1296 - -
Aip07g00797 1299 Coils Coil 1290 1299 - -
Aip07g00797 1299 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 21 1296 IPR044567 GO:0080188
Aip07g00797 1299 CDD SF2_C_SNF 1092 1228 - -
Aip07g00797 1299 Gene3D - 1020 1299 IPR027417 -
Aip07g00797 1299 SMART helicmild6 1132 1217 IPR001650 -
Aip07g00797 1299 MobiDBLite consensus disorder prediction 271 292 - -
Aip07g00797 1299 Pfam Helicase conserved C-terminal domain 1100 1216 IPR001650 -
Aip07g00797 1299 Pfam SNF2-related domain 724 952 IPR000330 GO:0005524|GO:0140658
Aip07g00797 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1017 1280 IPR027417 -
Aip07g00797 1299 CDD DEXHc_ATRX-like 721 947 - -
Aip07g00797 1299 Gene3D - 690 976 IPR038718 -
Aip07g00797 1299 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 746 946 IPR014001 -
Aip07g00797 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 688 948 IPR027417 -
Aip07g00797 1299 SMART ultradead3 717 955 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00797 Aip-Chr7 8685301 8691693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00797 1096 1235 RAD5 or RAD16-like Gene Family AT5G43530 32.168 1.59e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip07g00797 SNF2_N 2e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00797 K10875 - gmx:100811703 1743.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00797 07 8685301 8691693 Aip07g00797 07 8685301 8691693 ECH
Aip10g01467 10 26021117 26026600 Aip07g00797 07 8685301 8691693 PCT