Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00706 ATGGAAAACTCAGACCACAACGAACCCGAAAAGAAGAGGCCTCACCTCACTTCCGTTTCTTCTCGCGTGGCGCGAAACTCTCCATCGAACAACAAAACCGCTGATGCTGGAGTCTTACAAGCACAGAACCAGCAGCTCGTTCAAAAGATTGACATCCAAAAGCGTGCTTTGCATGACCTTGAAGAAAAAATTAGAGAGTTAAAAGAGCGGCAAAATACCCATGACGATTTGTTAATTGCAGTGAACCAATGTTGGATTCAGTTGTCTGATGATCTGACTCTTCTTGGTGTACGAGCTGGTAGAAGCAAAGATGCATTACAAACACTAGATTACCATAATAACCGTCGAGGTTCACTTCCTTCATGCCCTGCAGAGGATATATTTCTGTGTAGATTGATCCAGAAAGATTCTGTTGATGGAAACAGTATTGGTGAGAGAATTAATTATGTTGAAGAAAGCCTTGCTTTACGCCGGTCATCTACGTTAGAGTTGTTGAAACTCCTTCAAGATACCATGGAGGCTCAGATGGAAAGAATTGACAGTATAGCCCAGGTTTTGCATGGCGAGTTATCTTCAGAAGATGCTATAATTCAGATGTCTCAGATTGATGACATGATGAAAGAAGAGGAAAGTAATTTACGTGAAATCATTAATGCTCTCAACGATTCACATAAAGAGTATACTATTGGAATTCAAAGTTATATCAGTTGGTGCTTACAAGATCAGTCTGAAGTTAAACGCCTTGCAGGTGACCTTGAAGAGAGCATAACTGGACTTGAAGAGAGTAGAAGAAANGTTAACGGAAACTTGTCTCCTGAAAAACCCACAGACAGGACTATGAGTTTGCGTGAGCTGAAGGATTCAATTGAGGAAGCAAAGATACTGAATGCTGATCGTCTTACTGAGCTTCAAGAGGCACACGAAGAAAATGAAACCTTGACAAAGCAATTCCAAGATTTTCAGAATGAACTGAACGATGACAAGTATATACGCACTTCCAGAATATATTCATTGACGAATGATCAACTTCAACATTGGATTGCTGAGTTAGCTCGGTATAAGATGTTGGTAGAGTCTCTGCAGGCGGGAAGTGTCCATGTCACAAAATGGGAGAAGGAGCTGAACTCCAAATTGGAGTCTGTTGATACTGCAAGGCATGCCATTGACTGTTCAGATTCCAGGATTGAAGAGCTGGAGGTTCAGTTGCAGAAGTGTACTATTGAAAAGAATGATCTTGAAATTAAGATGGAAGAGGCTATACAAGATACTGGGAGAAAAGATATCAAATCCGAGTTTCGTGTGATGGCTTCAGCTTTGTCCAAAGAAATGGGAATGATGGAAGCTCAGGTCAAGCGATGGAAGGATGCAGCTCATGAGGCGGTATCGTTACGCGAGAAAGCTCATTCACTAAGAGCTGTGTTGAGTGGGAAGACAAGCGAAGTTAGCAGCCTTGCAAACAAATGTACTGAACAGGATTTGGAAATTAAGTCTTTAAGAGCATTGATTGAAAAGTTACAGAAGGAGAAACTAGAGTTGGAATTCATTCTGGAAATGCATGGACAAGAGAATTATGATAAAAGTACTCTGGCAGAAATTAGAGAATCTGAAAATAAAGCCCACTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATAGTCTTGAGTTAAGAGTAAAAGCTGCTAATGAAGCTGAAGAAGCTTGTGAACAAAGGCTTGCTGCTGCAGAAGCTGAAATAGAGGACTTAAGAGCCAAGCTGGATGCAGCTGAAAGAGATATTTTGGAGCTGACCGAGGCTATTAAAGTGAAAGAGGCTGAGGCAGAGGCATATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAACATCTGATGAAGCAGGTGACTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGTGTGAAGACAAAACAAGTACACAGTTCTTTAGTGGCTGAGAAGCAGGCCTTGGCAAAGCAACTTCAACAAATTAACTCTTTAATTGATGCCTCAAAAATGAGGATTGCACACGTTGAGGAACAGATGAAGGCTGTTCTATCAGAAGGCATCAAATGTAATCAGGAGGAAAAAAACCTTCATGTCACTCTGGAATTTGCCAAGTGGGAATTGGCTGATGCTGAGAAGGAGTTAAAGTGGCTGAAGTCTGCCCTTTCCTCTTCAGAGAAAGAATACGACCAAATACAGAAAGATGTGGCAGCAGTTGAAATGGAATTAGAAAGTGAAAGGAGTTCACGGATGAAGCTCGAGGAAGAACTCAGGGAAGTGAACAGGCAAATCGCCGAGCTGAGTTCTGAAACGGGTGAAACCGCAATACAAAAGCTCGAAGCAGAAATAAAGATCTGTAAGAACATGATTAAGTGCACAGTCTGTTCTGATCGGCCAAAGGAGGTGGTGATTGTCAAATGCTATCATCTGTTCTGCAATCCATGCATACAAAGAAATCTAGAGCTCAGGCACCGCAAGTGCCCTGCATGTGGAACAGCATTTGGACAAAGTGATGTTCGCTTTGTTAAAATATGA 2571 0.4138 MENSDHNEPEKKRPHLTSVSSRVARNSPSNNKTADAGVLQAQNQQLVQKIDIQKRALHDLEEKIRELKERQNTHDDLLIAVNQCWIQLSDDLTLLGVRAGRSKDALQTLDYHNNRRGSLPSCPAEDIFLCRLIQKDSVDGNSIGERINYVEESLALRRSSTLELLKLLQDTMEAQMERIDSIAQVLHGELSSEDAIIQMSQIDDMMKEEESNLREIINALNDSHKEYTIGIQSYISWCLQDQSEVKRLAGDLEESITGLEESRRXVNGNLSPEKPTDRTMSLRELKDSIEEAKILNADRLTELQEAHEENETLTKQFQDFQNELNDDKYIRTSRIYSLTNDQLQHWIAELARYKMLVESLQAGSVHVTKWEKELNSKLESVDTARHAIDCSDSRIEELEVQLQKCTIEKNDLEIKMEEAIQDTGRKDIKSEFRVMASALSKEMGMMEAQVKRWKDAAHEAVSLREKAHSLRAVLSGKTSEVSSLANKCTEQDLEIKSLRALIEKLQKEKLELEFILEMHGQENYDKSTLAEIRESENKAHSQAEMLKNALDEHSLELRVKAANEAEEACEQRLAAAEAEIEDLRAKLDAAERDILELTEAIKVKEAEAEAYISEIETIGQAYEDMQTQNQHLMKQVTERDDYNIKLVSESVKTKQVHSSLVAEKQALAKQLQQINSLIDASKMRIAHVEEQMKAVLSEGIKCNQEEKNLHVTLEFAKWELADAEKELKWLKSALSSSEKEYDQIQKDVAAVEMELESERSSRMKLEEELREVNRQIAELSSETGETAIQKLEAEIKICKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00706 856 MobiDBLite consensus disorder prediction 1 40 - -
Aip07g00706 856 Pfam Zinc finger, C3HC4 type (RING finger) 803 845 - -
Aip07g00706 856 Gene3D - 621 806 - -
Aip07g00706 856 Coils Coil 206 226 - -
Aip07g00706 856 Coils Coil 532 552 - -
Aip07g00706 856 Coils Coil 488 518 - -
Aip07g00706 856 Coils Coil 43 77 - -
Aip07g00706 856 Coils Coil 303 323 - -
Aip07g00706 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 853 IPR013083 -
Aip07g00706 856 SUPERFAMILY RING/U-box 803 847 - -
Aip07g00706 856 MobiDBLite consensus disorder prediction 19 40 - -
Aip07g00706 856 Coils Coil 388 422 - -
Aip07g00706 856 CDD RING-HC_BRE1_like 802 843 - -
Aip07g00706 856 ProSitePatterns Zinc finger RING-type signature. 819 828 IPR017907 -
Aip07g00706 856 ProSiteProfiles Zinc finger RING-type profile. 804 842 IPR001841 -
Aip07g00706 856 Coils Coil 559 614 - -
Aip07g00706 856 PANTHER RING FINGER PROTEIN-RELATED 12 856 IPR013956 GO:0004842|GO:0010390
Aip07g00706 856 SUPERFAMILY Tropomyosin 666 804 - -
Aip07g00706 856 SMART ring_2 804 842 IPR001841 -
Aip07g00706 856 Coils Coil 713 782 - -
Aip07g00706 856 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00706 Aip-Chr7 7235205 7243829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00706 788 851 RAD5 or RAD16-like Gene Family AT5G05130 32.812 5.92e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00706 K10696 - gmx:100796610 1236.86