Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00664 ATGGACATGATGATGAATATTGACGAATCCAACAACAACAACAACAACAACATGATGAGTAGTGATAGTAATAAGTTTCTTTCGTCTATTATGGCTACTGTCATCAACAAGAACACCAACAATTCTTCTTCTTCTTCACCTTCTACCTTCAACATGCCTCATCATCATAACTATACCAGCCACCACCAGCAACAACAACAAACCGCCACAAACACCAACAGCAACGCCGCCGGAAGTAGTAGTCTACAAGTTAGGGATAAGATCATGGCACATCCTCTCTTCCCTCGTCTCTTATCTTCTTACCTTAATTGCTTGAAGGTTGGAGCACCTCCAGAAGTGGTGGGTAGGTTAGAGGAGTTATGTGGAAAGTGTTCATCATCATCATCATCAAGAAGATCAGATAGTAATTCATGCATAGGTGAAGATCCAGGGCTTGATCAGTTCATGGAGGCATATTGTGAGATGCTCATTAAATATGAGCAAGAGATTTCTAAACCCTTCAAAGAAGCCATGCTCTTCTTCTCAACAATTGATTCCCAGCTTAAGGCCCTTTCTCTTTCACCACATTTTGGTACTAATCATCAAAGTGAATCATCATCATCTTTACTACAAAATGAGGTTGATGTGCTTGATGAGAACAACAACAATAATAGGAACATGGATACAAGTCAAGCTGAAGAAGACAGGGAACTAAAGATCCAGCTTCTGAAGAAGTACAGTGGATATCTTGGTGGACTCAAGAAGGAGTTTCTCAAGAAGAAAAAGAATGGAAAGTTGCCAAAAGAAGCTCGCCAGCAGCTTCTTGATTGGTGGAACAGACATTACAAATGGCCTTATCCTTCGGAATCCCAGAAACAGGCACTAGCAGAATCAACAGGGCTAGATTTGAAGCAGATAAACAATTGGTTCATCAATCAGAGGAAACGCCATTGGAAGCCTTCTGAGGACATGCAATTTGCTGTTATGGATGCAACTAACCACTACATGGAAACTATCATGTGCAAGCCATTTCCCATGGATACCATGCCTATTCTATTTTAA 1041 0.4073 MDMMMNIDESNNNNNNNMMSSDSNKFLSSIMATVINKNTNNSSSSSPSTFNMPHHHNYTSHHQQQQQTATNTNSNAAGSSSLQVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVGRLEELCGKCSSSSSSRRSDSNSCIGEDPGLDQFMEAYCEMLIKYEQEISKPFKEAMLFFSTIDSQLKALSLSPHFGTNHQSESSSSLLQNEVDVLDENNNNNRNMDTSQAEEDRELKIQLLKKYSGYLGGLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNHYMETIMCKPFPMDTMPILF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00664 346 SMART HOX_1 252 317 IPR001356 GO:0003677
Aip07g00664 346 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 11 337 - -
Aip07g00664 346 SUPERFAMILY Homeodomain-like 252 323 IPR009057 -
Aip07g00664 346 SMART ELK_2 230 251 IPR005539 GO:0003677
Aip07g00664 346 ProSiteProfiles ELK domain profile. 230 250 IPR005539 GO:0003677
Aip07g00664 346 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 337 - -
Aip07g00664 346 SMART KNOX2_2 135 186 IPR005541 GO:0003677|GO:0005634
Aip07g00664 346 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677
Aip07g00664 346 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677|GO:0006355
Aip07g00664 346 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Aip07g00664 346 Pfam ELK domain 230 251 IPR005539 GO:0003677
Aip07g00664 346 ProSitePatterns 'Homeobox' domain signature. 288 311 IPR017970 GO:0000981|GO:0006355
Aip07g00664 346 MobiDBLite consensus disorder prediction 37 80 - -
Aip07g00664 346 Pfam KNOX1 domain 84 124 IPR005540 GO:0003677|GO:0005634
Aip07g00664 346 Gene3D - 248 321 - -
Aip07g00664 346 CDD homeodomain 262 314 IPR001356 GO:0003677
Aip07g00664 346 Pfam KNOX2 domain 138 184 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00664 Aip-Chr7 6517048 6521723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00664 68 340 Homeobox Transcription Factor Family AT1G62360 60.000 6.28e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Aip07g00664 KNOX2 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00664 - - ahf:112702242 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00664 07 6517048 6521723 Aip07g00664 07 6517048 6521723 ECH