Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aip07g00649 | ATGGACCTTGATGGGGGCAACAAGCGCGTGTACCAACGATTAGGTGGACCCTCAGGGGACTCGAAGCATCAGAAAGTGTGCTATCACTGGCAAGCTGGCAAGTGCAATCGTCACCCATGCCCTTTTCTTCATAGCGAGTTGCCAACTCCCAATGTTAATGGTACCTCTTCGAAGAGGCCTCATGGTTCTGCTGACAATTCCGGATTTTCGGGACATCGCCGGAACCCTCACTTCAACAACACATGGGGTCGCGGTGGTGGTCGTGGTGGCGGTCGCGGTGCCAGTGGTGGAGTTGTTGGTGGTGACATGAGTGTAGTTAGGAAGGCTGATAAAGTTTGTAATTATTGGATTCAGGGGAATTGTAATTTTGGTGAGAGGTGTAAGTTCCTTCACTCTTGGAATACAGGGGATGGGTTTTCTATGTTGACACAGCTTGAAGGCCATCAGAAGGTTGTTAGTGGAATTGCCTTTCCTTCTGGCTCGGATAAGCTTTATACTGGAAGTACTGATGAGTCTGTAAGGGTTTGGGACTGCCAGTCTGGAAAGTGTGTAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTAGGCATACCTAATTTTGTGAAGGTCTGGAACACACAAAATTCAATGGAACTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGTATTCCATGTCTTGGTTGGAGATTAACTTGTTGGTACTTTAA | 780 | 0.4641 | MDLDGGNKRVYQRLGGPSGDSKHQKVCYHWQAGKCNRHPCPFLHSELPTPNVNGTSSKRPHGSADNSGFSGHRRNPHFNNTWGRGGGRGGGRGASGGVVGGDMSVVRKADKVCNYWIQGNCNFGERCKFLHSWNTGDGFSMLTQLEGHQKVVSGIAFPSGSDKLYTGSTDESVRVWDCQSGKCVAVINLGGEVGCMISEGPWVFVGIPNFVKVWNTQNSMELSLNGPVGQVYALVVNNDMLFAGTQYSMSWLEINLLVL | 259 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aip07g00649 | 259 | ProSiteProfiles | Zinc finger C3H1-type profile. | 107 | 134 | IPR000571 | GO:0046872 | |
| Aip07g00649 | 259 | Gene3D | - | 102 | 132 | - | - | |
| Aip07g00649 | 259 | ProSiteProfiles | Zinc finger C3H1-type profile. | 21 | 47 | IPR000571 | GO:0046872 | |
| Aip07g00649 | 259 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 145 | 177 | - | - | |
| Aip07g00649 | 259 | MobiDBLite | consensus disorder prediction | 51 | 77 | - | - | |
| Aip07g00649 | 259 | Gene3D | - | 7 | 57 | - | - | |
| Aip07g00649 | 259 | SMART | c3hfinal6 | 109 | 133 | IPR000571 | GO:0046872 | |
| Aip07g00649 | 259 | SMART | c3hfinal6 | 21 | 46 | IPR000571 | GO:0046872 | |
| Aip07g00649 | 259 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Aip07g00649 | 259 | Pfam | Zinc finger domain | 113 | 131 | - | - | |
| Aip07g00649 | 259 | SUPERFAMILY | WD40 repeat-like | 130 | 246 | IPR036322 | GO:0005515 | |
| Aip07g00649 | 259 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 1 | 247 | - | - | |
| Aip07g00649 | 259 | Gene3D | - | 133 | 248 | IPR015943 | GO:0005515 | |
| Aip07g00649 | 259 | PANTHER | - | 1 | 247 | IPR044715 | - | |
| Aip07g00649 | 259 | MobiDBLite | consensus disorder prediction | 51 | 97 | - | - | |
| Aip07g00649 | 259 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 145 | 186 | IPR001680 | GO:0005515 | |
| Aip07g00649 | 259 | SUPERFAMILY | CCCH zinc finger | 108 | 132 | IPR036855 | GO:0046872 | |
| Aip07g00649 | 259 | SMART | WD40_4 | 138 | 177 | IPR001680 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aip07g00649 | Aip-Chr7 | 6309455 | 6310987 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C3H | Aip07g00649 | zf_CCCH_4 | 4.1e-07 | CL0537 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aip07g00649 | - | - | aip:107606730 | 506.908 |