Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00579 ATGGCTGATCGGAAGAGGGAGCACAAGGTAGTGACTCGGTGCGGGTGTCCTGTGGAGATGCGTATTAAGCCTAAAGGGGATAGTGGGAGATGGTTTGTGTCTTTTTTTGTGGAGGAACATAACCATGAGCTCCTGCCTATGAAGTATGTGGACTATCTACCTGCACACCGTAAGATATCTGATGTTGATATTGCACACATGAAGAGCATGAGGCAAGTTGGGATATCAATTCCAAAGATCTATGAGTCCATTGCTGCACAGGCGGGAGGTTTTAATTTGGTTCCGTTTACAAAGCGAGATATGTACAACGAGATTAGGCGACAAAGGGCGATGCAGAATGGTGACGTGAATGCTGCGTTGAGGGTTTTGGAGGGTGCGGCCCGGACGGACGAGAAATTGTATTGGAGGTACGAGGTTGGTGAGGGGCAGCACATGTGCGATCTATTTTGGAGTGATGGGCGAAGCCAGGATGATTATAAAGTATTTGGAGATGTACTAGCATTCGATGCAACTTACGGGCGGAACAAGTACAATCTGCCAGTAATTGTTTTTTCTGGGGTTAATCATCACAACCAGACCTGCGTGTTTGCAACTGCGATGGTTTCATGCGAGTCAATTGCATCATATGTATGGGTTTTAAGAAATTTACTGCAATGCATGGGGGGTAAAGCACCAACAGCGGTGATAACTGATGGCGATCGATCAATGCGCGTAgctattcaggaagtgtttccaaatgctcaccatcgcttatgcgcttggcaCCTTTTGAAGAATGCAACGGTTAACGTGTGTAAACCCCGATTCACATCGTTGTTTAGACATTGCATGCTTGCTGATGTTGAGGTTGGGGAGTTTGAGTTGCTTTGGGATGCCATGCTGGAGGAGTGTGGGGTTAGGGAGTTAGAGTGGGTCAAGGACGTATACGAGAAGAAGTCTTCATGGGCAACTGCTTACATACGGGGCAGGTTTTATGCTGGGCTCCGCACAACATCTCGGTGCGAGTCATTGCACGCAAAGTTAGGGAGATTTGTGGAAAGGCGATACGGCATACTTGAGTTTGTAACCAATTTTCAACGATGTGTGGACTTCCTGAGGGACAATGAGGAAGAGCTTGACTTCCGATCATCGTACGGGACACCGGTGCTTCAAACACAGTTCCCGGAGTTAGAAAAGTCAGGAGCAATAAACTTCACAAGGGAAATATTCTCAAGATATCGTGAGTCACTTAAAAGGTGTGTTCGGATCACCATATTGGAGTGCATCGAGCGTGACGATAGGTGTGTGTATGTAACACAGAAGTATAGAAGACCGAATTCACGGTGGGATGTGGTTCATATGAAAGGGAAAGAGGAGTTTCTTTGCAGTTGCCTGAGGATGGAGTCATTTGGTTTGCCATGTGTTCACATTCTAGCAGTTTTGGTTAGGTTAGATATTGATTCCCTTCCTAAGAGTCTTGTGTTGGCGCGGTGGTCCAAAGCAGCGAAGGAAGATCTTTGTTACGAACCGTTAAGCAGCCGATATGGTGATGCGGGTGTTTTGTATCGGAGTAGAGTGGGTGCATTCCTCCAGCACTGCAAGCGGTTAGCAAAAGTAGCATGTATTAGGGAGGAGGACTTTAGGCAATATTTAGCTAAGGTTGTAGAGGATACATGTTGGCTTGAAAAAAAAAATGGACTAGGAGGTGCAGTTGCTGGGAATGGAGCTGGCAACAGTGGGGGAGGGGTTAGGGATCCTATTAGTGTCAAGACGAAAGGCACAGGACGTGGTAATGAACCTCTTGGGTGTAGGGGTATCAAGCGGCGTAAGTGCAGCACATGCGGTTGTGTTGGTCATCGAAGGACCCGGTGTCCCAATGCTCCACCGACATCAGCACCCTCAACCCAGGGCGAGGGGTCCGTAAAGGTAGGAAGAAGGGAGAATTGTGTTGATGATCCTTGTAGCGGTTTCGACGTATTAATTGGTGGGTATTCGCAAGTTCTCATTCAGCGTGGGTTGCTAATGGTGCAAGTATGTGTTATTGGTCATGCTGATGTGTTGGGATGTGGGCTGGTGGTGATGGTGTGCCTCAATATTTCACTTAGAGACGCTGTGACTGCAGTGCGGGCAAGGATCGAGTGTGGACTTCTGACTGAAGCATTTATGCATCAGAGGAATCTCTGCACAAGGGTGAAAGAAAAGAGCTTCAATAATGGATCACCTCTACAGACTGCTGATGTACCAAAAGGGCTATTTAGTTATTGGGTGGAGGTCTTGGTAACCGAGATTTGTTGCCTCTGTATAAGGAGGAACTTAGTGGATAGAATGCTAGAATTGCCATAG 2322 0.4612 MADRKREHKVVTRCGCPVEMRIKPKGDSGRWFVSFFVEEHNHELLPMKYVDYLPAHRKISDVDIAHMKSMRQVGISIPKIYESIAAQAGGFNLVPFTKRDMYNEIRRQRAMQNGDVNAALRVLEGAARTDEKLYWRYEVGEGQHMCDLFWSDGRSQDDYKVFGDVLAFDATYGRNKYNLPVIVFSGVNHHNQTCVFATAMVSCESIASYVWVLRNLLQCMGGKAPTAVITDGDRSMRVAIQEVFPNAHHRLCAWHLLKNATVNVCKPRFTSLFRHCMLADVEVGEFELLWDAMLEECGVRELEWVKDVYEKKSSWATAYIRGRFYAGLRTTSRCESLHAKLGRFVERRYGILEFVTNFQRCVDFLRDNEEELDFRSSYGTPVLQTQFPELEKSGAINFTREIFSRYRESLKRCVRITILECIERDDRCVYVTQKYRRPNSRWDVVHMKGKEEFLCSCLRMESFGLPCVHILAVLVRLDIDSLPKSLVLARWSKAAKEDLCYEPLSSRYGDAGVLYRSRVGAFLQHCKRLAKVACIREEDFRQYLAKVVEDTCWLEKKNGLGGAVAGNGAGNSGGGVRDPISVKTKGTGRGNEPLGCRGIKRRKCSTCGCVGHRRTRCPNAPPTSAPSTQGEGSVKVGRRENCVDDPCSGFDVLIGGYSQVLIQRGLLMVQVCVIGHADVLGCGLVVMVCLNISLRDAVTAVRARIECGLLTEAFMHQRNLCTRVKEKSFNNGSPLQTADVPKGLFSYWVEVLVTEICCLCIRRNLVDRMLELP 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00579 773 SMART 26again6 453 480 IPR006564 GO:0008270
Aip07g00579 773 Pfam FAR1 DNA-binding domain 4 46 IPR004330 -
Aip07g00579 773 Pfam Nuclear pore complex assembly 691 773 IPR025151 -
Aip07g00579 773 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 499 IPR031052 GO:0006355
Aip07g00579 773 ProSiteProfiles Zinc finger SWIM-type profile. 443 478 IPR007527 GO:0008270
Aip07g00579 773 PANTHER OS02G0262500 PROTEIN 5 499 - -
Aip07g00579 773 Pfam MULE transposase domain 165 259 IPR018289 -
Aip07g00579 773 Pfam SWIM zinc finger 455 475 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00579 Aip-Chr7 5378578 5382025 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aip07g00579 ELYS 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00579 - - adu:107485726 1105.12