Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00576 ATGAATGACCGTGTTGATCTGGTGGACAAAATCACTCCGTGGAGAGAATCATGGAAAGTGCATGTTAAAGTTGTCAAGTTGTGGTACCACAAGAATCCTGCTTTGGATTCTTCTCAAAATCTATTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAGGCCACCATTAGAGATCAGCTAATATCAAAATTTGCCTTGTCTCTAAATGAAGGAATTGTGTACTTGATGACCCACTTTACAGTTGTACCCAACACTGGTTTGAACAGGGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAACACCTCTGTTGTTTCTGTGGTATGTCCAAGGATACCTCATTCGGGTCTGTGTTTTGCATCATTAGATGAAATTGATCAAATGACAAAGCACCACAGTTTCCTGATTGACTTTGTTGGGATTATTACTGGTGTTCGAAAAGAAAGAGATGTGGCATCATATGGGAAGCTGGTGAAAGCAGTGGTGCTAGAAGTCTTTGCTGATGGGAAAAGGGTACAATGCAATGTGTTTGGAAATGCTTGTGATTTGTTAGAATATGATAAGTTACAAAAATATGCAAGATCTCCCCTGGTTGTCCTCGAGTCTTTTAAAATCAAAGCCATTGAAGGTGGGGTAATCCTACAGAATGTGATAGATGTCTCTAGGTTATTCATTAATCCTGACATTCCTGAGGCCGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGTTATGGATTCTCAAGCCTTGTGACCAATGACCTTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATTCCAAAGAGATCAGTAATATTCAAGATCTTCATTCAGATAATGGGGATTCTCATTACTTTGTTATTGGGACAATTAAGGAAGTTATGGATGAACCAGATTGGTGGTACTACACATGTGTGTGTGGTCAAGCTGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAGAATGTTATGGTCAAATATGGAATTCGGGTAAAGATTCAGGATGCTAGGTGTACTGTTTTGTTTGTTTTGCTTGATAATGCGGCAACAAAACTATTTGGAAGAACCTGTTCTGAAGCATTTCTTAGCATAGAAGATGAATTTCCAGTTGATCCTAGTGTGCTTGCAGTTTGTCGGTCATATTCTCCACAAATGTTTGATCATGTTGTTGGAGAGGAGAAAGTTTTTAAGGTTGAAATTGATTCTGCAGTTGATCCAGATTACTCCAGTTGCTTTAAAATTGTGAATGTCTTTAGTCATAATCAAGAACCAGTTGCAGTCGATGATTATATCAATGGATCTTATTGCAAAGTTGTTCCATTGAAACTCATTTCAAGTCTTTTGCACAAAAAAGTTGTGTTCATGGTTGATGCTAGGCCTGTGGGTTATGAGATGAATCGTTCTGTGTATATTGTTCAACAAATCTGGGATGATGCCTCTGTTATTAATGTTTTTGAGGCTGCTGCTGAGATGAATGACCATAAGATTCATGTTCTGGTTGATTCTATGCCTGAAGTTGAGGATGCTTTCAGCCAATGTGGAAGTGATCATGAGGCCGTGGAGGATCTGCATGCTTTTTAG 1614 0.3885 MNDRVDLVDKITPWRESWKVHVKVVKLWYHKNPALDSSQNLLHMVLMDEKLHKIQATIRDQLISKFALSLNEGIVYLMTHFTVVPNTGLNRVTKHRFRLLFQYNTSVVSVVCPRIPHSGLCFASLDEIDQMTKHHSFLIDFVGIITGVRKERDVASYGKLVKAVVLEVFADGKRVQCNVFGNACDLLEYDKLQKYARSPLVVLESFKIKAIEGGVILQNVIDVSRLFINPDIPEAVEFLSRFSVASYGFSSLVTNDLGYLVSKVDGDYFNSKEISNIQDLHSDNGDSHYFVIGTIKEVMDEPDWWYYTCVCGQAVVEHEDLYLCDACGSCVENVMVKYGIRVKIQDARCTVLFVLLDNAATKLFGRTCSEAFLSIEDEFPVDPSVLAVCRSYSPQMFDHVVGEEKVFKVEIDSAVDPDYSSCFKIVNVFSHNQEPVAVDDYINGSYCKVVPLKLISSLLHKKVVFMVDARPVGYEMNRSVYIVQQIWDDASVINVFEAAAEMNDHKIHVLVDSMPEVEDAFSQCGSDHEAVEDLHAF 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00576 537 SUPERFAMILY Nucleic acid-binding proteins 122 244 IPR012340 -
Aip07g00576 537 PANTHER REPLICATION FACTOR A 1, RFA1 21 366 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip07g00576 537 SUPERFAMILY Nucleic acid-binding proteins 269 420 IPR012340 -
Aip07g00576 537 CDD RPA1_DBD_A_like 19 107 - -
Aip07g00576 537 Gene3D - 7 111 IPR012340 -
Aip07g00576 537 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 21 366 - -
Aip07g00576 537 CDD RPA1_DBD_B_like 140 242 - -
Aip07g00576 537 Gene3D - 262 434 IPR012340 -
Aip07g00576 537 Pfam Replication factor-A C terminal domain 291 370 IPR013955 -
Aip07g00576 537 Pfam Domain of unknown function DUF223 44 110 IPR003871 -
Aip07g00576 537 SUPERFAMILY Nucleic acid-binding proteins 7 108 IPR012340 -
Aip07g00576 537 Gene3D - 114 248 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00576 Aip-Chr7 5332494 5336142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00576 1 368 Core DNA Replication Machinery Family AT5G08020 21.827 1.65e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00576 - - aip:110268227 870.152