Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00568 ATGGCTAAGAAGCGAAAGGTTCGACCTTCCGAGCCCGAACCCCCCAAACAAGAGCAAGAGCAAGAGCTTCAACAACAACAGCCACCACACGAAGAACTAACCTTAGATCAACAACAAAGCATGACCATCGATGACGCAGCGCCACAACAAGACCAACCTCAAAACGACATCGCAATAGAAGAAGAACAAAACAACGAAGGAGAAGGAGAAGAAGAAGCAGAAGAAGAACAGCAACAGGAGGATCAGCAGCAACAACAGCAAGGAGGGGGAGAAACCCTAGAAAGCCAGGAAGAGCAGATTCAACAGCAGGCTTCGGGTTCGGATTCGGTCCGGGCCGAGGCTAACGGCTCCGAGCAGCAACAGGAAGAGGAGGACCTCGATTTGGAAGACGAGCCAATCGAGAAGCTTCTAGAACCCTTCACGAAGGAGCAGCTACACTCCCTTGTCAAGCAAGCCGTCGAGAAGCACCCCGATTTCTCCGAAACCGTTCGCCAGCTGGCAGATGTGGACCCCGCACACCGGAAGATCTTCGTCCATGGGCTTGGCTGGGACACTACCGCAGAAACCCTAACCGCCGTGTTCGGAAAATACGGCGAAATTGAAGACTGCAAGGCCGTGACGGACAAAATCTCCGGAAAATCGAAGGGATACGCGTTCATCCAATTCAAGCACCGCGCTGGAGCGCGAAGGGCGCTTAAGCAGCCGCAGAAGAAGATTGGGAACAGAACAACTTCGTGCCAGTTGGCCTCTGCGGGACCTGTTCCGTCGCAGCAGGCGGCCGCGCCGGGTGCCCCGGTTGTGTCAGAGTATACACAGAGGAAGATCTTTGTTAGCAATGTGAGTGCGGAGATTGATCCTCAGAGGCTTCTGGAATTCTTCAAGCAGTTCGGGGAGATTGAGGATGGGCCTCTTGGGATTGACAAGCAGACAGGGAAGCCTAAAGGGTTTGCTCTTTTCGTGTACAAAACAGTTGAGAGTGCGAAGAAGGCGTTGGAGGAGCCAAACAAGAACTTTGAAGGGCACACCCTTTATTGCCAGAAGGCTGTTGATGGTCCCAAAGGGTTCAATAAGGGTGGATTTCATCAGCAGCAGCATCACCATCAACAGCACTATCAGCACCAATCACATCACCATCATCAGGGTCACTTTCATAGGAAGGATAAGAACAAGTATTCCGCTGGTGGGCCTGCACATGGCGGTGGTGCTGGTCACTTGATGGCGCCGTCGGCTCCAGGGCCTGCTGTTGGAGGTTACAATCCTGGTGTGCCACCTGCTGCTGCGGCGCAGGGTCTCAACCCTGCACTTGGGCAGGCGCTGACGGCGTTGCTTGCTAATCAGGGTGCCGGATTGGGACTTGGGAACCTGCTTGGAGGGATCGGTGGTGCTCCTGTGAACCAGCCTGGCCTCACCCCGGTGCTGGCGCACCTTACATGGGTCATTAGATACACTCATAGATGCATCAATCATTTAGTTTTGGACACCGCTGATTCTTCTGAAGTACCGGGCAATATTCAAATGCATCTTTTAAATTAG 1533 0.5329 MAKKRKVRPSEPEPPKQEQEQELQQQQPPHEELTLDQQQSMTIDDAAPQQDQPQNDIAIEEEQNNEGEGEEEAEEEQQQEDQQQQQQGGGETLESQEEQIQQQASGSDSVRAEANGSEQQQEEEDLDLEDEPIEKLLEPFTKEQLHSLVKQAVEKHPDFSETVRQLADVDPAHRKIFVHGLGWDTTAETLTAVFGKYGEIEDCKAVTDKISGKSKGYAFIQFKHRAGARRALKQPQKKIGNRTTSCQLASAGPVPSQQAAAPGAPVVSEYTQRKIFVSNVSAEIDPQRLLEFFKQFGEIEDGPLGIDKQTGKPKGFALFVYKTVESAKKALEEPNKNFEGHTLYCQKAVDGPKGFNKGGFHQQQHHHQQHYQHQSHHHHQGHFHRKDKNKYSAGGPAHGGGAGHLMAPSAPGPAVGGYNPGVPPAAAAQGLNPALGQALTALLANQGAGLGLGNLLGGIGGAPVNQPGLTPVLAHLTWVIRYTHRCINHLVLDTADSSEVPGNIQMHLLN 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00568 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 174 251 IPR000504 GO:0003723
Aip07g00568 510 SUPERFAMILY RNA-binding domain, RBD 270 366 IPR035979 GO:0003676
Aip07g00568 510 Gene3D - 261 395 IPR012677 -
Aip07g00568 510 Gene3D - 144 260 IPR012677 -
Aip07g00568 510 SUPERFAMILY RNA-binding domain, RBD 165 255 IPR035979 GO:0003676
Aip07g00568 510 CDD RRM_RBM24_RBM38_like 174 249 - -
Aip07g00568 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 350 IPR000504 GO:0003723
Aip07g00568 510 MobiDBLite consensus disorder prediction 1 129 - -
Aip07g00568 510 MobiDBLite consensus disorder prediction 80 116 - -
Aip07g00568 510 MobiDBLite consensus disorder prediction 1 18 - -
Aip07g00568 510 MobiDBLite consensus disorder prediction 61 79 - -
Aip07g00568 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 176 243 IPR000504 GO:0003723
Aip07g00568 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 343 IPR000504 GO:0003723
Aip07g00568 510 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 468 - -
Aip07g00568 510 SMART rrm1_1 175 247 IPR000504 GO:0003723
Aip07g00568 510 SMART rrm1_1 274 346 IPR000504 GO:0003723
Aip07g00568 510 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 468 - -
Aip07g00568 510 MobiDBLite consensus disorder prediction 19 60 - -
Aip07g00568 510 Coils Coil 57 79 - -
Aip07g00568 510 MobiDBLite consensus disorder prediction 354 408 - -
Aip07g00568 510 CDD RRM_RBM24_RBM38_like 273 348 - -
Aip07g00568 510 MobiDBLite consensus disorder prediction 363 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00568 Aip-Chr7 5213825 5216388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00568 269 352 C2H2 Transcription Factor Family AT2G19380 32.143 1.74e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00568 K12741 - gmx:100792637 476.478