Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00543 ATGTCGATTGCAGGGCAACTGAACGTGAACGAATCCCATTCTTGGGGATCCAGAAGTGTGGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACATACGGTCAAGTTTACATGGCTAAAGAGATCAAAACTGGTGAAATTGATGCTCTGAAGAAAATTCGAATGGACAATGAGAGAGAAGGGTTTCCTATAACTGCTATACGAGAAATCAAAATTCTTAAGAAACTACACCATGAAAATGTGATCAAGCTAAAAGAAATTGTCACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGTAACAAATATAAAGGGGGCGTCTATATGGTCTTCGAATACATGGACCATGATTTGACTGGTCTTGCTGACTGTCCTGGGATGAGATTCACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTGTTGACGGGGCTTCATTATTGTCATGTAAATCAAGTACTTCATCGAGATATTAAAGGCTCAAATCTCCTTATGGACAATGAAGGAAATCTGAAGCTTGCAGATTTCGGACTGGCATGGTCATTTTCTAATGATCACAATGCAAATCTTACAAACCGTCCTGAACAACTAAATAAAATATTTGAGCTGTGTGGAGCACCGGATGAGGTGAACTGGCCTGGGGTTTCCAAGACTCCTTGGTATAATCAATTTAAACCAACAAGGCCAATGAAAAGACGTTTGAGGGAAGTTTTCAGACACTGGAGTTGTGAATTTGTGGAGGAGACTTTGTGTCCTAGATGCACAATAGATTTACTGGCACTATTCTAA 801 0.4132 MSIAGQLNVNESHSWGSRSVDCFEKLEQIGEGTYGQVYMAKEIKTGEIDALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGVYMVFEYMDHDLTGLADCPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLMDNEGNLKLADFGLAWSFSNDHNANLTNRPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPTRPMKRRLREVFRHWSCEFVEETLCPRCTIDLLALF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00543 266 Gene3D Transferase(Phosphotransferase) domain 1 120 195 - -
Aip07g00543 266 Gene3D Transferase(Phosphotransferase) domain 1 196 261 - -
Aip07g00543 266 SUPERFAMILY Protein kinase-like (PK-like) 16 246 IPR011009 -
Aip07g00543 266 PANTHER CELL DIVISION PROTEIN KINASE 196 247 - -
Aip07g00543 266 PANTHER CYCLIN-DEPENDENT KINASE C-2 196 247 - -
Aip07g00543 266 ProSiteProfiles Protein kinase domain profile. 23 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip07g00543 266 Gene3D Phosphorylase Kinase; domain 1 9 119 - -
Aip07g00543 266 SMART serkin_6 23 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip07g00543 266 Pfam Protein kinase domain 23 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip07g00543 266 PANTHER CELL DIVISION PROTEIN KINASE 8 197 - -
Aip07g00543 266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
Aip07g00543 266 PANTHER CYCLIN-DEPENDENT KINASE C-2 8 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00543 Aip-Chr7 4887806 4891258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00543 1 255 Core Cell Cycle Gene Families AT5G10270 68.852 1.78e-144 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aip07g00543 Pkinase 4.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00543 K08819 - gmx:100793565 464.536