Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00542 ATGTTTTATGTTATATCCCTCTTCTCTTCTTTCCTCGTTCACAACGACCACCCTTCTTCCTTCTCTCCTTCGTCATCTTCTTCTTCTCATAACTCCTACACCGTCTTAAGAAAAATAAACCAAAACGACGTCGCATCTTCCATCAAGGACTGGTTCAACACGCTTGACCCACTCATCACCCGAATCTTTCAGATTCTCTCTTCGACCGACTCCTCCTCCTATAACGACGACGCCGCCGTCGATGCCTCTCTCTCCGCCCTAACGCTACCCCGTCTCGACGAGTCCTTCGTCCTCACCGTACTCCACCATGGCACCGCCGCCGCACACGTCTACCCCTGTCTCCGCTTCTTCCATTGGGCCGGCCGCCAGCCCGACTTCCACCACACTCGCGGCACCTTCTCCGCCATCTTCCGAATCCTCGCTCCCGCCCCATCAGTGGAAGGCCTTGACGAATTCCTCCAATCCTTCAATCGTCGTGGCCCCGCTTTGTGTGGGAGCAATAGGTTTGGTCATGCTGTTAGGTTGGTTAGGGAGTTTGGGAATTTGGGACTGGTGCCGTTGGATCATGCTTATGGGGTTTGTATAAGGGACCTTGTGCAGGGTGGCCGGTTAAATGAGGCCTTGAAGTTTTACAGACAGAAGAAGGAAGATGAAGGATACATTCCTGGTTTGGGGAGTTACAACCTGTTGATTTACAAGCTCTTGAGGGAGAACAGACTCATCGAGGTGTATGATTTGTTTACAGACATGTCTGAGACTAATGTTCCGCCGAATACGGCTACCATGAATGCTGTGCTGTGCTTCTTTTGTAAGGCGGGGATGGCGGATGTAGCTCTTGATCTGTTCAAGTCGAGGTCAGAGTTTATGCTGTCCCCAAATCATATGGCTTATAAGCACTTGATACTTGCTTTGTGTTGGGACGGAAACGCCAAAGAAGCATTCAGTGTGTTCAAGAGCTCGATCGATCACTGTTTTATTCCAGATACAGGGACCTTTACTAGGCTTGCTAATGTTCTGTGTAGAGAGTGCATGATTGATGAGATGAAAGAGTTGCTCCATTTTGCCTTGGAATGGAAAATTATGCCTAATGCTTCCACGTATGACAACTTTATAACGGCACTGTGCCGGACAGGAAGAGTGGAAGATAGTTATTTGATACATGGGGAACTTAAAGGTGCGTCTTCTAGCAGGGCCTATGCAAATATGATAAAGGGTTTTAAAGAGTTGAACAGGGGAGATATTGCTGCTCGTCTTCTCGTTGAAATGAAGGAGAAGGGTCATAAAGTGACACCGGCTCTATGTAGAGTTGTTGTTTGTTGTTTACTTCAGATGGACAATTCAAGGTCTCGGTTTTTGAGTTTGTTTGAGATGCTGTCTCATAATGATCGTCAACATTATATTTATGATTGTTTCATTGATGCGGCTGGGCATGCCAAGCAGGCTGAGTTGGCTTGGAAAGTGTTTGAGTTGATGCAGAGGAATGGCATTCAGCCTACTTCATCTTCTCTATTTCTTATGTTGAAAGCTTATTTGGAAAGTGGAAGGACTTATGATGCTCTTAACTTCTTTAATAATGTTTGGTCCCGTGGATTGGCTACTAGAAAGTTATATAATTGCTTGGTCGTTTCTCTCTGCAAAAGCAAGAATCCTGAACCTGCGTATCTTCTCTTACAACAAATGTTAAGAGACGGTTTTCATCCAAGCATTGAATGCTATGAGAATCTTGTACTGGCGCTTTGTTCATCGAAAAGATATCATGAGGCAGTGAATCTTGTTAATGTGTATGAGAAAATGGGACGTCAATTAACCTCTTCTCTCGGTAACATACTTCTTTCTCAATCTATGTCTTCACTGGAAGTTTACAATGCCTGTGTTCGTTTAAGAGGAGTGAAAGAGGAGGGAGAAACTGATTGGTCAATGCTTAGCTTTGTGGTTGGTGCATTTTATGATCATCATAGAGTTAGCCATGTTGAGGACTTGGAGAAACTAATAGCAAAGTGCTTTCCACTTGACATTTACACTTACAATTTGTTGTTGAGAAAAGCATGTAAGAGTGATATGGGGCAGGCTTGTGAGTTGTTTGAAAGGATGCGTCGAAGGGGCTTTGAGCCCAACCGGTGGACTTATACCATCCTGGTTTATGGTTTCAAAAGGCATGGGACGAGAGACGAGGCTGAGAGTAACCATTCTCATTCGGCGATCTTTCTCTGTTACCTTCAAATATGTGGTCTCTTAGTGGTCGAGCATCTCTTCTTCTCAGTCAATTCTGGTACTTTGGAGTCTTCTAGAAGGACATATGATCGTTTGTTGTTGCCGAATACGTTTTACCATTCCGGGCATGCCTCCCTGAAATTCGCTGTGAGTAGGCGCGAACTTTCTTCGCAAGGTGATGCCAATAGCATGATAGATCAGGATGGTTTGGAGGAATCACACTGCGAATTTACAGAGAAAGAAGGACTTCTTGGTTTGCTTACGGATAAATTTGATAAAGAAAGGAAAGAAAAAATCAGACAAAATATCTCACGGGCATGGCGCAAGATTAACCTTAACCCTCACAACCCTGAGTGTAAAGCTGAACTGATTGAGAAGTTGGTAGAAGCAAAAAGTCTGAGTGAATTTAGGGAGAGATATCTTCCTACTTATGTTAGTTTGATTGCTAAATTGTCTGATTATGAGCTACATGAATTAGAGAAGTACTTTGAGGGTTATCCAGAACCTTCTAAAGGGAAATTTGCTGGAATTCTTTTATCAATTCGTGGCGCTCAGGCCAAAAGAAATGCAGTTTTAGTTGAACACTATATAACCGTTGGGTTAAAAGAAGATGCCAAAGATTTATTGAAGAAGATGGAAGATGAAGACCTACAAAAGAATCCTCGGGTTGGTAGGTATTTACTTCTGTCTTATGTGAAATTGGGTGATATAGATGAAGTGAGAAGAATTTGGGAGCTTTGTCAAGTTAGCCCTCGAAGGGAAGTGTGTCTGGCTGCAATTAAGTCTCTTGCTGAATTGAATAAAATTGATGAAGCAGAGGCGGCTTTCGAGTTTATGTCCAAGAGAGGGCTGCTTCTACCCAAAAACTACTCACTTATGCTGAAGATTTATGCAAATAATAAGATGGTAAAAAAGGGCACCGATCTCGTTATGCAAATGGCAGACAATGGGATCCAAATAGGCCCATTGACATGGGACGACCTAGTTAAACTTTATATCAAAGCAGGGGACGTTGAGAAGGCAGAAACCGTTTTACAGGAGGCAATCCTTCTGAACAAGGAGAAACCATATATCAAGTCTTATACTGCTATTATGGAACTTTATGCCAATACAGGTGATATCCATAGTATAAAGATGATTTGGCACAAAATGAAAGAAGTGGGCTACAAGTTTAGTTCGAGGCAATACGAAATTCTACTACAGGCATATTTAATTGCCAAGCTTCCGGCACATGGAATGAGGGACATGATGAAAGCCGATAACATAGTTCTCAACCCAGTTCTTCGGCGTTTGTTGGTTCAAGTTGATCCTTTTCATAAGATTGAAACCTTAGATTTGCGTATCTTTAATGTGCAGCATAAACTTGTCTCCATTGATGATAATGCTTCTCACTCTGAAAATTATTTCAAATTTACTATTTTATATGCTGCTGCGTTTGTGAATCAGTATGGACCTGAAAGCAATGGTGCCATGAGTTGCATCTTTGGTATGTCACTTTACCCACAGGGTGGTGGTTCTGTTGGAAAAAGTCACCAGTGTTTGGTTTTTGGGTTAACTGGTGCTGGTGTTGCTTTGTTAGTTATGTCTTGTTTGTTAGGGGTTTATATTTGGTATGATAGGAAGGTTAGGAGGAAGAAGCTTAATGATGATGAATTTGATTTTGATCCTGAGGAACAAGGGTCTAGGCGTAGGTTGAGGCCGAATACGGGGCCTATTTGGTTCAAGATTGATGAGCTTGAGAAGGCTACTGATAATTTCTCAACCAAGATTTTCATTGGCATGGGTGGATTTGGCCTTGTTTTCAAGGGGGTTTTGTCCGATGGTTCGGTCGTGGCGGTTAAGAGGATCTTGGAATCTGATTTTCAAGGGGATGTGGAGTTTTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCACCGGAATCTGGTGCCTCTTCGAGGCTGTTGTGTAGAGTGTAGTGGTGATGATGATGAAAAATTTAATGACAGGGGAAGCCATAGGTTTTTGGTTATGATTACATGCCGAATGGAAACCTTGAAGACCATCTGTTTCTGGTGA 4269 0.4289 MFYVISLFSSFLVHNDHPSSFSPSSSSSSHNSYTVLRKINQNDVASSIKDWFNTLDPLITRIFQILSSTDSSSYNDDAAVDASLSALTLPRLDESFVLTVLHHGTAAAHVYPCLRFFHWAGRQPDFHHTRGTFSAIFRILAPAPSVEGLDEFLQSFNRRGPALCGSNRFGHAVRLVREFGNLGLVPLDHAYGVCIRDLVQGGRLNEALKFYRQKKEDEGYIPGLGSYNLLIYKLLRENRLIEVYDLFTDMSETNVPPNTATMNAVLCFFCKAGMADVALDLFKSRSEFMLSPNHMAYKHLILALCWDGNAKEAFSVFKSSIDHCFIPDTGTFTRLANVLCRECMIDEMKELLHFALEWKIMPNASTYDNFITALCRTGRVEDSYLIHGELKGASSSRAYANMIKGFKELNRGDIAARLLVEMKEKGHKVTPALCRVVVCCLLQMDNSRSRFLSLFEMLSHNDRQHYIYDCFIDAAGHAKQAELAWKVFELMQRNGIQPTSSSLFLMLKAYLESGRTYDALNFFNNVWSRGLATRKLYNCLVVSLCKSKNPEPAYLLLQQMLRDGFHPSIECYENLVLALCSSKRYHEAVNLVNVYEKMGRQLTSSLGNILLSQSMSSLEVYNACVRLRGVKEEGETDWSMLSFVVGAFYDHHRVSHVEDLEKLIAKCFPLDIYTYNLLLRKACKSDMGQACELFERMRRRGFEPNRWTYTILVYGFKRHGTRDEAESNHSHSAIFLCYLQICGLLVVEHLFFSVNSGTLESSRRTYDRLLLPNTFYHSGHASLKFAVSRRELSSQGDANSMIDQDGLEESHCEFTEKEGLLGLLTDKFDKERKEKIRQNISRAWRKINLNPHNPECKAELIEKLVEAKSLSEFRERYLPTYVSLIAKLSDYELHELEKYFEGYPEPSKGKFAGILLSIRGAQAKRNAVLVEHYITVGLKEDAKDLLKKMEDEDLQKNPRVGRYLLLSYVKLGDIDEVRRIWELCQVSPRREVCLAAIKSLAELNKIDEAEAAFEFMSKRGLLLPKNYSLMLKIYANNKMVKKGTDLVMQMADNGIQIGPLTWDDLVKLYIKAGDVEKAETVLQEAILLNKEKPYIKSYTAIMELYANTGDIHSIKMIWHKMKEVGYKFSSRQYEILLQAYLIAKLPAHGMRDMMKADNIVLNPVLRRLLVQVDPFHKIETLDLRIFNVQHKLVSIDDNASHSENYFKFTILYAAAFVNQYGPESNGAMSCIFGMSLYPQGGGSVGKSHQCLVFGLTGAGVALLVMSCLLGVYIWYDRKVRRKKLNDDEFDFDPEEQGSRRRLRPNTGPIWFKIDELEKATDNFSTKIFIGMGGFGLVFKGVLSDGSVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVECSGDDDEKFNDRGSHRFLVMITCRMETLKTICFW 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00542 1422 Gene3D Tetratricopeptide repeat domain 635 771 IPR011990 GO:0005515
Aip07g00542 1422 Gene3D Tetratricopeptide repeat domain 1024 1173 IPR011990 GO:0005515
Aip07g00542 1422 Gene3D Tetratricopeptide repeat domain 922 1023 IPR011990 GO:0005515
Aip07g00542 1422 Gene3D Tetratricopeptide repeat domain 99 286 IPR011990 GO:0005515
Aip07g00542 1422 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 26 158 - -
Aip07g00542 1422 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 162 727 - -
Aip07g00542 1422 PANTHER OS02G0127600 PROTEIN 162 727 - -
Aip07g00542 1422 Gene3D Phosphorylase Kinase; domain 1 1294 1397 - -
Aip07g00542 1422 Gene3D Tetratricopeptide repeat domain 534 625 IPR011990 GO:0005515
Aip07g00542 1422 Gene3D Tetratricopeptide repeat domain 287 448 IPR011990 GO:0005515
Aip07g00542 1422 Gene3D Tetratricopeptide repeat domain 449 533 IPR011990 GO:0005515
Aip07g00542 1422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Aip07g00542 1422 Pfam PPR repeat family 671 716 IPR002885 -
Aip07g00542 1422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 671 704 IPR002885 -
Aip07g00542 1422 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Aip07g00542 1422 TIGRFAM PPR: pentatricopeptide repeat domain 536 568 IPR002885 -
Aip07g00542 1422 TIGRFAM PPR: pentatricopeptide repeat domain 673 705 IPR002885 -
Aip07g00542 1422 TIGRFAM PPR: pentatricopeptide repeat domain 226 259 IPR002885 -
Aip07g00542 1422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
Aip07g00542 1422 PANTHER OS02G0127600 PROTEIN 26 158 - -
Aip07g00542 1422 SUPERFAMILY TPR-like 503 595 IPR011990 GO:0005515
Aip07g00542 1422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Aip07g00542 1422 Pfam Pentatricopeptide repeat domain 1095 1140 IPR002885 -
Aip07g00542 1422 ProSitePatterns Protein kinases ATP-binding region signature. 1329 1351 IPR017441 GO:0005524
Aip07g00542 1422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 533 567 IPR002885 -
Aip07g00542 1422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Aip07g00542 1422 SUPERFAMILY Protein kinase-like (PK-like) 1302 1418 IPR011009 -
Aip07g00542 1422 ProSiteProfiles Protein kinase domain profile. 1323 1422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip07g00542 1422 Pfam PPR repeat 467 496 IPR002885 -
Aip07g00542 1422 Pfam PPR repeat 226 252 IPR002885 -
Aip07g00542 1422 Pfam PPR repeat 399 426 IPR002885 -
Aip07g00542 1422 Pfam PPR repeat 261 283 IPR002885 -
Aip07g00542 1422 Pfam PPR repeat 1061 1084 IPR002885 -
Aip07g00542 1422 Pfam PPR repeat 297 319 IPR002885 -
Aip07g00542 1422 Pfam PPR repeat 537 565 IPR002885 -
Aip07g00542 1422 SUPERFAMILY TPR-like 667 1137 IPR011990 GO:0005515
Aip07g00542 1422 Pfam Protein tyrosine and serine/threonine kinase 1329 1388 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00542 Aip-Chr7 4862753 4875175 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00542 1186 1407 Receptor kinase-like Gene Family AT1G11050 50.901 7.73e-60 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Aip07g00542 PK_Tyr_Ser-Thr 8.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00542 - - aip:107606466 1446.03