Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00522 ATGTGGCCTTCCAGGTCCCTCAACTACGGCCTCGCACCTCCCGACATGCCTCCGGGAATGGTTGGACTCCGCGACGTCTTCGTCGTCGCTCCGGCCTCCTCCTTCCACCACCACCACCACCACCACAACGATGCCGTCTTGTCCTCCTCCGATCTTCACCATCTCAGCAACAATTCCTCCAACAATCCCGCAACTGCACTCGGCGTTGGAGTTGGAGTCGGTGTCATCCCTCTCCTCACTGCAACGCCGTGTCTCGATCAGGACAATATTCTCACCGGAAGAGCCAGAACCGCCGCCTCCGGAGGTACTACCGGAGGCGGAATTCAATTCTGGCAGGAACAACAACCGCATCATCATCAGTACCTGAAGAAGCAGGGTTTTATAGACCACAATATCGGAGCCAATTTGGTTCCCGGTGGAGGCAGCGGAAGCGGCAGCGGCGATGGCGGTGCTTCCAACAGCGGCGGTGGAACAACCACGTGTCAAGATTGCGGGAACCAAGCGAAGAAGGATTGTGCACATAGGAGGTGCAGAACTTGCTGCAAGAGTAGGGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTTCCAGCTGCGCGCCGGAGGGAGCGCCAGCTCATCACTGGCACGACTCCGTCGACGGCCGCTGCGGTTGCCGGTTCCAGCGGTTCAACTTCCGGCGCCAAGAAACCTCGGTTGATTTCTTCACAGACAACAACAAATTCTCACACTTCAACTTCCAACACCACTCCTCCTAGAAGCTTCGACACTTATTCTAGCCATCAAGATGCGAGTTTCAAGGAGAAATTGCCTGGTCAAATAAGAGCACCAGCAGTGTTCAAGTGTGTGAGAGTCACGTCAGTGGACGATGAACAAGATGAGTATGCATATCAAGCCGTTGTGAAGATCGGTGGCCGTGTCTTCAAAGGCTTTCTCTATGATCAAGGCCATCAGAATCATAGTAATAGAGATAGCAATAATAGTAACAATAATGTGTATCCTAATCTTTCTGAGCTCCATTTAGGTGGTGGCGGCGGCGGTGGCAGCGGCGGTGGTGGTAGAAATGGGGTTTCATCATCCTCCCCAATGCTTGATCCTTCTGATGTTTATGCAGCTTCAGGTGGTGGTGGTGGTGGTGGTGTTGGGGGGTTACTGGGAGGTTCAACCTATGGTAATCCAATAAATTGA 1191 0.534 MWPSRSLNYGLAPPDMPPGMVGLRDVFVVAPASSFHHHHHHHNDAVLSSSDLHHLSNNSSNNPATALGVGVGVGVIPLLTATPCLDQDNILTGRARTAASGGTTGGGIQFWQEQQPHHHQYLKKQGFIDHNIGANLVPGGGSGSGSGDGGASNSGGGTTTCQDCGNQAKKDCAHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLITGTTPSTAAAVAGSSGSTSGAKKPRLISSQTTTNSHTSTSNTTPPRSFDTYSSHQDASFKEKLPGQIRAPAVFKCVRVTSVDDEQDEYAYQAVVKIGGRVFKGFLYDQGHQNHSNRDSNNSNNNVYPNLSELHLGGGGGGGSGGGGRNGVSSSSPMLDPSDVYAASGGGGGGGVGGLLGGSTYGNPIN 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00522 396 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 396 - -
Aip07g00522 396 MobiDBLite consensus disorder prediction 319 373 - -
Aip07g00522 396 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 160 202 IPR006510 -
Aip07g00522 396 MobiDBLite consensus disorder prediction 136 157 - -
Aip07g00522 396 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 396 IPR007818 GO:0003700|GO:0006355
Aip07g00522 396 MobiDBLite consensus disorder prediction 207 267 - -
Aip07g00522 396 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 271 317 IPR006511 -
Aip07g00522 396 Pfam Domain of unknown function (DUF702) 158 319 - -
Aip07g00522 396 MobiDBLite consensus disorder prediction 319 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00522 Aip-Chr7 4634781 4637719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00522 2 370 C2H2 Transcription Factor Family AT5G12330 47.769 1.97e-83 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aip07g00522 DUF702 9.7e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00522 - - qsu:111988887 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00522 07 4634781 4637719 Aip07g00522 07 4634781 4637719 ECH