Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00510 ATGGCTTTCTTTAGGAATTTTCTAAATGATAATGTCTCCCATAGCGTCATTGAAGATAAAGACCAAGAACAGAATGCTGATAGAGTACATAGATCAGTAGGTAATGAGTGTGTGGATGCAACGTCTGGTGAGAAGGAATTTGATATGAACATGGAGGCACAATACCAGAGTGATGGTGAGCCAGATGGGGTTAATGGAATGCAAAATGAAGCAACAACTGATGATGGAGTTGGTGAGAGAGAATCAAACTTAGAGACTACTGGTAGTAAAACAGCTATGGTTGGAGAGTGGGGTTCAACATTTTTTCAGGACTGCCGGCCTATGTGCCCTCAGGATGGTTCTGACTCTGGGCAGGAATCGAAAAGTGGATCAGAATATAGAAATGAAGATGGCTCTGAAGAAAATTCTGATTCGCTGCATTACAAGGGGGCACATAAAGCAAGCGGGTTGAATTCATGGCCTCAACGGATGTCCAACAATGCCAACAGCACTGGGCGTAGGAGGTCTAGAATTGTAGATGATGGCGAAGATGATGACGGTGATAATGATGATGATGACGGTGATGCTGATTATGAGGAGGAGGATGAAGGAGATGAAGATGACCCAGATGATGCAGACTTTGAGCCTGCAGCAGGTGGTCGTGCTGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCTGATGAAGATGATGACAGTGATGTAAATCTAGATGTTTCAGACGATGATGATGATGACGACGATGACGATTCTTACTATGCCAAAAAACCTAAGGCAAGGCAAAGAGGTAAAGTTGGACGAAGCATAAAGTCTAGTAGAGATCGCAAAACATATGCTTCGTCTGGTCGACAGAGAAGAGTTAAATCTTTTGAAGATGAGGAATCAACAGCAGATGATTCTGACAGTGATAGTGATGAGGATTTCAAGAGCGTAAAGAAGAGAGGAGCTCATGTCCGCAAGAATAATGGTCGCTCTTCTGCAGCCAGTAGTTTATCTTTGCGCAACAGTGAGGTTCGCACGTCTAGTAGATCAGTTAGGAAGGTATCATATGTTGAAAGCGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCACAGAAGGAAGAGATTGAAGAGGATGATGGTGACTCTATTGAAAAAGTGCTTTGGCATCAGCCGAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTGATGAATCACTTGTTTGAGTCTGAAATTGATTGGAGCGAGATGGAATTCTTGATAAAATGGAAGGGCCAGTCGCATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAATCTTAGTGGTTTCAAGAAGGTTTTGAATTATACTAAGAAGATAATGGAGGACATTAGATACAGGAAGACAATCTCAAGAGAGGAGATTGAGGTCAATGACGTGAGTAAGGAGATGGATTTAGATATTATTAAACAAAACAGTCAGGTGGAAAGAATAATTTCAGATAGGATCATTAAAGATAATGGTGGCAATGTTATTCCTGAATACTTGGTCAAGTGGCAAGGATTATCCTATGCTGAAGCGACCTGGGAAAAGGACACTGATATTGCTTTTGCTCAACATGCTATTGATGAATATAATTTATTTCTCTCTCTCTCTCTCTCTCTCTCTGGGCTGGCTGCAATGTCTGTTCAAGGAAAGACGGTAGATTCCCAGCGCAAGAAGAGCAAATTAAGTCTGCGGAAGCTTGAGGAACAACCCGAATGGTTGAGGGGTGGAAAGCTCCGTGATTATCAGCTTGAGGGTCTGAATTTTCTTGTTAACAGCTGGAGAAATGATACGAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGCCCTTTTCTTGTAGTTGTACCACTGTCTACTTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATCATTATATATGTTGGAACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTACAATGATAAAAAGCCTGGAAAACCTATTAAGTTCAATGCGCTGTTGACTACATATGAAGTAGTTTTGAAAGACAAGGTTGTTCTCTCCAAGATCAGATGGAGTTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCGCAGCTATATACAACACTTTCAGAATTTAGCACCAAGAACAAGTTACTTATCACTGGAACTCCTCTACAGAACAGTGTTGAAGAACTATGGGCTTTGCTGCACTTCCTTGATCCTGACAAGTTCAGTAGCAAGGATGATTTCGTACAGAACTATAAGAATCTGAGTTCTTTCAATGAGAATGAGCTTGCAAATCTTCATATGGAATTGAGGCCTCACATACTGCGAAGAGTTATCAAAGATGTCGAGAAATCGTTACCCCCTAAAATTGAACGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAGCGCAATTTTCATGATTTGAACAAAGGAGTTCGCGGGAATCAGGTTTCCCTTCTAAATATTGTAGTGGAATTAAAGAAATGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGGAAGTAGTGACAACAGTAAGCGAGAGAGAATTGTCTTTAGCAGTGGCAAGCTTGTCATACTTGACAAGCTACTTGTCAGATTGCATGAAACCAAGCATCGTGTTCTGATTTTCTCTCAGATGGTCAGGATGTTGGATATACTCGCAGAGTATATGTCGTTACGCGGGTTTCAATTTCAGAGACTTGATGGCAGTACAAAAGCTGAGCTTCGTCAGCAGGCAATGGATCACTTTAATGCACCTGGAAGTGAGGATTTTTGTTTCCTCCTTTCAACACGTGCAGGAGGTCTGGGTATCAACCTTGCAACTGCAGATACTGTCATTATATTTGATTCAGATTGGAACCCTCAAAATGATCTGCAGGCAATGAGTAGAGCTCATAGAATTGGCCAACAAGAAGTTGTGAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAGGATATTTTGGAACGTGCCAAAAAGAAGATGGTTCTTGACCACTTGGTCATACAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCAAAAAAAGGAGGATGCTTTTTTGACAAAAATGAGCTATCCAAAATATTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGACGAAGAAAGCAAGAAACGACTCTTAAGTTTGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAACAAGGAAATGAATTATTAAGTGCATTTAAGGTGGCCAATTTTTGTAACGATGAAGATGATGAAAGCTTTTGGAGTCGTTGGATTAAGCCCGATGCTATAGTCCAAGCAGAGGATGCTCTTGCTCCGCGTTCTGCAAGGAATATTAAAAGCTATGCAGAGGATAATCAATCTGAAAGAAGTAATAAAAGAAAAAAGAAGGATCCTGAACCACCTGAACGAGCTCAGAAACGCCGGAAAGCAGAGTACTCAGCTCCTGCAGTACCAATGATTGATGGAGCATCTGCCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCCGTTTTTCTCGTTCAGTTATGAAATATGGGAATGAGAGCCAAATTGACTTGATTGTTGCTGAGGTTGGTGGTGCACTTGGAGCTGCTTCACTTGAAGCACAGTGTGAACTCTTCAATGCTCTAATTGAGGGTTGTACAGAGGCAGCAGAACTTGGCAGTCTGGATCCAAAGGGGCCTTTGCTGGATTTTTTCGGTGTCCCAGTGAAGGCGAATGATCTACTTGCCCGTGTCCAGCAACTTCAACTCCTAGCAAAGCGCATTAGTCGGTATGAAGATCCCATTCAACAGTTCCGTATTTTATCATATCTCAAGCCTTCAAACTGGTCGAAAGGTTGTGGATGGAACCAAATTGATGATGCAAGATTGCTTCTTGGAATACATTTTCATGGATTTGGTAATTGGGAAAAGATTAGATTAGATGAACGGCTTGGTCTTAACAAAAAAATTGCACCAGCAGAACTCCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGATCGCGCAAATGCCCTTTTGGAGCAGGAACTTGCTGTTCTTGGTGTGAAAAATGCTAATACCAGGGCTGGACGGAAACCTTCCAAGAAAGAAAGAGAACATATGATGAACAACACGCCACTGTTGCGTGGGCAGGAGAAGAAGAAAATGGGTTCTGCTAAAGTCAATGTCCCAATGAGAAAGGATAGACCTCAGAGACCGCAGAAGGTTGAACCTATAGTAAAAGAGGAGGGCGAAATGTCAGATGACGAGGAAGTATATGAGCAGTTCAAGGAAGTAAAGTGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGGCTTCACAGGTTGCAGACAACCAGTGCAAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATACGTAACTATTTACAACAACTTGGGCGAAGGATAGATGAAATTGTCATTGATCATGAAGAAGAGCCATATAAGCAAGATAGAATGACTGTTCGGCTGTGGAAATATGTCTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAAACAGGAGCAACAAGATGAGGCAGGGGTTGGCCCCTCAAATGCCAATGGTTCAGCATCTCTTTCATTTGGCAGAAATGGAAACCCATTTGCTCACCAACTGGAGAGGCCAAGAAGATTCAAAAATGTTACAACCTACCAAATGCCAGAACCAGTTAATAGTACAGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGAGGACCATTTCCAGGGTCAGCCACCACCTCAAAGAACCATGAGCAACGGTATTCGTGTCACTGATCCTAGTGCACTTGGTATCCTTGGTGCTGGACCATCTGACAAACGTTTTGCCGGTGAGAAACCGTTTAGGGCACAACCTGGTGGGGGCTTTCCTTCAAGGCAAGGCTTCTCTTCAGaagagtttgatCCAATTACAATCAATATGTTGGTTAAAAAAAATCTCAAGATATATCAGGAGGAAGCGAAGCAAATTCTATACTGA 5262 0.4168 MAFFRNFLNDNVSHSVIEDKDQEQNADRVHRSVGNECVDATSGEKEFDMNMEAQYQSDGEPDGVNGMQNEATTDDGVGERESNLETTGSKTAMVGEWGSTFFQDCRPMCPQDGSDSGQESKSGSEYRNEDGSEENSDSLHYKGAHKASGLNSWPQRMSNNANSTGRRRSRIVDDGEDDDGDNDDDDGDADYEEEDEGDEDDPDDADFEPAAGGRAANKDKDWEGEGSDEDDDSDVNLDVSDDDDDDDDDDSYYAKKPKARQRGKVGRSIKSSRDRKTYASSGRQRRVKSFEDEESTADDSDSDSDEDFKSVKKRGAHVRKNNGRSSAASSLSLRNSEVRTSSRSVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTEPVLMNHLFESEIDWSEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRYRKTISREEIEVNDVSKEMDLDIIKQNSQVERIISDRIIKDNGGNVIPEYLVKWQGLSYAEATWEKDTDIAFAQHAIDEYNLFLSLSLSLSGLAAMSVQGKTVDSQRKKSKLSLRKLEEQPEWLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVVLKDKVVLSKIRWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFSSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKRERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSEDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGCFFDKNELSKILRFGAEELFKEERNDEESKKRLLSLDIDEILERAEKVEEKEAEGEQGNELLSAFKVANFCNDEDDESFWSRWIKPDAIVQAEDALAPRSARNIKSYAEDNQSERSNKRKKKDPEPPERAQKRRKAEYSAPAVPMIDGASAQVRNWSYGNLSKRDALRFSRSVMKYGNESQIDLIVAEVGGALGAASLEAQCELFNALIEGCTEAAELGSLDPKGPLLDFFGVPVKANDLLARVQQLQLLAKRISRYEDPIQQFRILSYLKPSNWSKGCGWNQIDDARLLLGIHFHGFGNWEKIRLDERLGLNKKIAPAELQHHETFLPRAPNLRDRANALLEQELAVLGVKNANTRAGRKPSKKEREHMMNNTPLLRGQEKKKMGSAKVNVPMRKDRPQRPQKVEPIVKEEGEMSDDEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQQLGRRIDEIVIDHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSNANGSASLSFGRNGNPFAHQLERPRRFKNVTTYQMPEPVNSTGKSEAWKRRRRAESEDHFQGQPPPQRTMSNGIRVTDPSALGILGAGPSDKRFAGEKPFRAQPGGGFPSRQGFSSEEFDPITINMLVKKNLKIYQEEAKQILY 1753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00510 1753 MobiDBLite consensus disorder prediction 1599 1683 - -
Aip07g00510 1753 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 722 731 IPR002464 -
Aip07g00510 1753 Pfam Domain of unknown function (DUF4208) 1503 1595 IPR025260 -
Aip07g00510 1753 Gene3D - 1319 1429 - -
Aip07g00510 1753 SUPERFAMILY Chromo domain-like 375 458 IPR016197 -
Aip07g00510 1753 SUPERFAMILY Chromo domain-like 470 544 IPR016197 -
Aip07g00510 1753 Pfam Helicase conserved C-terminal domain 909 1022 IPR001650 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 322 347 - -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 1653 1668 - -
Aip07g00510 1753 SMART helicmild6 938 1022 IPR001650 -
Aip07g00510 1753 SMART chromo_7 489 548 IPR000953 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 1457 1478 - -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 54 380 - -
Aip07g00510 1753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 604 776 IPR014001 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 122 141 - -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 1456 1478 - -
Aip07g00510 1753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 579 813 IPR027417 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 1183 1211 - -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 151 166 - -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 82 96 - -
Aip07g00510 1753 CDD SF2_C_SNF 898 1033 - -
Aip07g00510 1753 SMART DUF4208_2 1491 1596 IPR025260 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 1603 1623 - -
Aip07g00510 1753 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 47 1638 - -
Aip07g00510 1753 Gene3D - 583 822 IPR038718 -
Aip07g00510 1753 CDD CD2_tandem 489 543 - -
Aip07g00510 1753 Pfam Chromo (CHRromatin Organisation MOdifier) domain 492 544 IPR023780 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 348 380 - -
Aip07g00510 1753 CDD CD1_tandem 376 456 - -
Aip07g00510 1753 Pfam SNF2-related domain 611 880 IPR000330 GO:0005524|GO:0140658
Aip07g00510 1753 Coils Coil 1106 1126 - -
Aip07g00510 1753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 912 1063 IPR001650 -
Aip07g00510 1753 Gene3D - 493 544 - -
Aip07g00510 1753 ProSiteProfiles Chromo and chromo shadow domain profile. 491 543 IPR000953 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 267 293 - -
Aip07g00510 1753 ProSiteProfiles Chromo and chromo shadow domain profile. 378 466 IPR000953 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 1176 1214 - -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 224 250 - -
Aip07g00510 1753 SMART ultradead3 588 787 IPR014001 -
Aip07g00510 1753 MobiDBLite consensus disorder prediction 176 206 - -
Aip07g00510 1753 Gene3D - 364 491 - -
Aip07g00510 1753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 816 1096 IPR027417 -
Aip07g00510 1753 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 47 1638 - -
Aip07g00510 1753 Coils Coil 1052 1072 - -
Aip07g00510 1753 Gene3D - 823 1053 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00510 Aip-Chr7 4423629 4439638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00510 614 1049 RAD5 or RAD16-like Gene Family AT1G02670 25.344 2.21e-33 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip07g00510 SNF2_N 6.1e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00510 K11367 - gmx:100792398 2696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00510 07 4423629 4439638 Aip07g00510 07 4423629 4439638 ECH