Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00502 ATGAAGCTTTCTTCCTCTGGGTTTAATCAACCAGCTGAAGAAGAAGGGGAGAAGAAAACTTTGAATTCTGAACTATGGCATGCATGTGCTGGTCCTCTGGTTTCTCTACCACTGGTTGGAAGTCGTGTAGTATACTTTCCTCAAGGTCACAGCGAACAGGTAGCTGCTTCGACCAACAGGGAAGCAGATGCACATATTCCGAATTACCCTAACCTGCCGCCCCAGCTTATCTGTCAGCTCCACAACGTGACGATGCATGCTGATGCTGAAACAGATGAAGTATATGCTCAGATGACTCTGCAACCTCTAAATCCACAAGAACAAAAGGATGTGTATCTACTTCCGGCCGAATTGGGTACTCCCAGCAAACAACCAACCAACTACTTCTGTAAGACATTAACTGCTAGTGATACCAGCACTCACGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTTCCTCCTCTTGATTACACACAGCAGCCTCCTGCTCAAGAACTGATTGCTAGAGATCTTCATGATAATGAATGGAAATTCAGACATATATTTCGAGGTCAGCCAAAAAGGCATCTTCTTACTACTGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCTGTTCTTTTCATATGGAATGAAAAAAATCAATTACTTTTGGGTATACGGAGAGCAAATCGTCCGCAGACTGTCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTCCTCGCTGCTGCAGCTCATGCAGCTGCCACAAACAGCCGTTTTACTATATTTTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCCTTGACCAAGTATGTAAAAGCAGTGTATCATACACGAGTTTCTGTTGGTATGCGGTTTAGGATGCTCTTCGAGACAGAAGAGTCAAGTGTCCGTCGATATATGGGTACTATAACAGGCATTAGTGATTTAGATTCAGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGTTGGGATGAGTCTACTGCAGGAGATAGGCAACCAAGAGTCTCCTTGTGGGAGATTGAGCCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTGAGGTTGAGGCGTCCTTGGCCATCTGGACTACCTTCTTTATACGGTCTCAAGGATGGTGGTGACATGGGCATTAATTCTCCTTTCATGTGGCTCCAAAGTGGGCTTGGGGATCAAGGAATGCAATCATTGAACTTCCAGGGGATTGGTGTTACACCGTGGATGCAACCGAGATTTGATGCTTCCATGCCAGGACTCCAACCGGAGTTATACCAAGCAATGACTTCTGCTGCATTCCAGGAAATGAGGACGATGGATCCTTCGAAACCTTCATCCCAATCTCTGTTGCAGTTTCAGCAGCCTTCAAATGTTCCTTCTGCTTTTGCATCTGAGTTACAGAGACAAGTGTTACCACAGTCTCAGCCCCAAAACACTCTTCTACAAAATTTTCAAGAACATCAAACTCCTGCACCGTCACAGATTTCACCACAGCAGTTGCATCGTTACCACCCATATAGCGATCAGCGGCAACAGCAGCAGCAACTAAAAACTGTGCCTGTTCAGCAGCAGTTACAGAATTTAGTCTCTCCGTTGTCTAATTTTGCATCAGCTACACAACCTCAATCTCCATCCTTGCAAGCCCTTGCTTCACATTGCCAGCAGCAGAGCTTTCCCGAGCCAATCAGGAATCATGTTTCAAGCTCTGATGTTTCCCCTATGCAAAGTCTACTAGGCTCATTCTCTCAGGATGGAGCATCACAGTTACTTAACCGGAACGGACCGAACTCTGTCATGTCTTCTGGAGCCTTACTACCGAAGCAAATAACCATTGAATCTCAGGTACCATCAGCTGGTGCTCAGTGTGTATTGCCTCAGGTGGAAAATTTGGGAACATCACAATCAAATGTGTCCGAACTTACCGCTTTGCCTCCGTTTCCTGGAAGAGAACATTCTGGATATCAAGGTGCAGCTGATCCTCATAGCAATCTTTTGTTTGGGATAAACATAGATCCTTCTTCTCTTATGCTGCAAAATGGCATGCAAAACCTTAGAAATCTAGGCAACGTGAACGATTCATTGTCAATGACGTTTTCTGCTCCAAATTGTGGTGGTGCTAATGCTCCTGGCTCCGATTTCCCCCTAAGTTCAAACGTAACAACTTCAAGTTGTGTTGATGAATCGGGATTCTTGCAGTCTTCCGAAAATGTAGACCAATCCAATACTCCAACTGGAACCTTTGTCAAGGTTCACAAGTCAAGGTCCTTAGGCAGGTCACTGGACATTTCGAAGTTCAGCAGCTATGACGAGCTGCGCAGTGAACTTGCTCGGTTATTTGGCCTTGAAGGCCAACTAGAGGATCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACATTCTCCTTCTTGGTGATGATCCCTGGCAGGAGTTTGTGAACAGTGTATGGTCCATTAAGATACTATCTCCACTTGAAGTTCAACAAATGGGGAAAGGTGTTGTTCCTTCTACTTCTGCCCCTTCAGCTCAAAAGCTTTCTTCTACTGCTACTACCAATTCTTGTGACAATAATTATGGTGTTGGTAAACAAGAGTTGAGAAGTTCCAGCAATGgatacaaaattgcttatggattctttcattctcctacttcattgagAAGGCACAGCCATAGCTCCGACGAGAAGCTTCTAGAACCGTCGACGAAACACTCTATTCCTTTCACTGGGTCAGTTTCTTTCTTCCATTTTTTCCTTCAATCTTTAATCTTCATGTTGAAATCATTCAAATCTTCAACAATCCATGTGCATAGAACAATATTGTTTTCCGTCAAAATCGCATCTTTCCCACTCTGCACCACCACCACCACTACACTTGGAGCAAAAAAGGATCAATTTTGGGATAGTGCAGAAGAAGAGAGTAGTGACAATGAATGGGAGAGGTTACTCAAACCGTTTGGCCTCAAACAACTTCGTAGTTCACTTTCCCCAATTAGCCCTTCCCAGCTTTGCAAATTGCTTTTGCTTCCACTTGACATTCCAACTACAATGGAGTTGTTTGAAAAAGCTGGTTCACAAAATGGTTATTCCCACTCCTTTGATGTGTACTGCATTTTGATTGATAAACTTGGTTCTAATGGGGACTTCAAAACTATAGATTTGTTGTTGAAGCAAATGAAGGATGAGGGTATTGTGTTTAAGGAATCAATCTTTATCATGATCATGAGGTATTATGGGAAAGCTGGGTTGCCGGGCCAGGCGACTCGACTTTTGTTGGATATGTGGGGTGTTTATGATTGTGAACCTAGTTTTAAGTCCTACAATGTTGTGCTGGAGATTCTGGTTGCCGGGAATTGTCCTAAGGTAGCGCCGAATGTGTTTTATGACATGCTGAATAGGGGTGTTTCACCAACTGTTTCTACATTTGGGGTGGTGATGAAGGCATTGTGTATGATTAATGAGGTTGATTCAGCTTGCTCACTTCTAAAGGACATGATGAAGCATGGTTGTGTTCCGAATTCGATCATCTACCAGACTCTAATTCATACTCTTTCGCAGAATAATAGAGTGAACGAGGCGATGAAGCTCTTGGAGGAAATGTTTCTGATGGGTTGCGAACCTGATGTGCAGACTTTCAATGATGTTATTTATGGCCTCTGCCGGGCCAGCAGGATTCATGAGGCAGCAAAGTTGCTTGATCGAATGCTGCTTCGCGGTTTCAGTGCAGATGAACTGACTTATGGTTTTTTGATTAATGGATTGTGCAGGACGGGACACGTTGATGAAGCAAGGGCCTTGTTGAATAAAATTCCTAACCTGAATGCTGTTCACTATAATACATTAATAAATGGCTATGTTGCTAGGGGACGGTTTGACGAAGCAAAGGATCTTTTGTACAATAACATGGTAATTTCAGGCTACAAACCCGATGGCTTCACGTTTAATATAATGATTGATGGGTTTTGCAAGAAGGGGCGGCTGGTCTCGGCTCTTGAATTCTTACATGAGATGGTAACAAAAGGTTTTGAGCCCTGCGTGGTCACATACACTATATTGATAAATGGTTTCTGCAAGCAAGGTCGATTAGATGAAGCTGTGGAAGTCGTGAATGCCATGTGGGCTAAAGGTCTCAGTTTAAACACAGTGGGATACAATTGCCTGATAAGTGCTGTGTGTAAAGATGGGAGGACTGAAGAAGCTCTACAATTGTTTGGTGAGATGTCAAGCAAAGGATGTAAACCTGACATTTATACATTTAATTCTTTAATATTTGGAATGTGCAACGATGACAAGATGGAAGAGGCTCTGCGCTTGTATCGTGACATGTTCATGGAGGGTGTTATTGCCAACACTGTGACATACAACACATTGATTCATGCATTTATTAGGAGAGGCGCAATTCAACAAGCATTTAAGCTTGTTGATGAGATGATATTTCGAGGGTGCCCTCTCGACAATATTACATATACGACACTTATTAAAGCTCTATGTATGGCCGGGGAAGTAGAAAAAGGATTGGCATTTTTTGAAGAAATGCTTGGGAAAGGGATATTTCCTGATACCAACTGTTGCAATATTCTGATCAATGCCTTTTGTAGAATCGGAAAGGTTACAAGCCGAAGGAATGCGTCCCGATGCTATCACGTGTGGATAACGGGTTCGTGCCCAATGAAATCACCTGATTATACTGGTAGTCCATTTGAATCAATTGATTTTTCTCATGTGAAACTAGAATCTCAACAATTTTTTTCTGTTCAGCACCAGTTCTCAATCTCCAATTGTACAGATCTTATGTATAAAGCAAGAGGGACATGGATGCTGAAGAGGGGTGAGGATGTGCTTGTGCTTGTGCAATTAAGATGA 4926 0.43 MKLSSSGFNQPAEEEGEKKTLNSELWHACAGPLVSLPLVGSRVVYFPQGHSEQVAASTNREADAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLNPQEQKDVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLTKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGGDMGINSPFMWLQSGLGDQGMQSLNFQGIGVTPWMQPRFDASMPGLQPELYQAMTSAAFQEMRTMDPSKPSSQSLLQFQQPSNVPSAFASELQRQVLPQSQPQNTLLQNFQEHQTPAPSQISPQQLHRYHPYSDQRQQQQQLKTVPVQQQLQNLVSPLSNFASATQPQSPSLQALASHCQQQSFPEPIRNHVSSSDVSPMQSLLGSFSQDGASQLLNRNGPNSVMSSGALLPKQITIESQVPSAGAQCVLPQVENLGTSQSNVSELTALPPFPGREHSGYQGAADPHSNLLFGINIDPSSLMLQNGMQNLRNLGNVNDSLSMTFSAPNCGGANAPGSDFPLSSNVTTSSCVDESGFLQSSENVDQSNTPTGTFVKVHKSRSLGRSLDISKFSSYDELRSELARLFGLEGQLEDPQRSGWQLVFVDRENDILLLGDDPWQEFVNSVWSIKILSPLEVQQMGKGVVPSTSAPSAQKLSSTATTNSCDNNYGVGKQELRSSSNGYKIAYGFFHSPTSLRRHSHSSDEKLLEPSTKHSIPFTGSVSFFHFFLQSLIFMLKSFKSSTIHVHRTILFSVKIASFPLCTTTTTTLGAKKDQFWDSAEEESSDNEWERLLKPFGLKQLRSSLSPISPSQLCKLLLLPLDIPTTMELFEKAGSQNGYSHSFDVYCILIDKLGSNGDFKTIDLLLKQMKDEGIVFKESIFIMIMRYYGKAGLPGQATRLLLDMWGVYDCEPSFKSYNVVLEILVAGNCPKVAPNVFYDMLNRGVSPTVSTFGVVMKALCMINEVDSACSLLKDMMKHGCVPNSIIYQTLIHTLSQNNRVNEAMKLLEEMFLMGCEPDVQTFNDVIYGLCRASRIHEAAKLLDRMLLRGFSADELTYGFLINGLCRTGHVDEARALLNKIPNLNAVHYNTLINGYVARGRFDEAKDLLYNNMVISGYKPDGFTFNIMIDGFCKKGRLVSALEFLHEMVTKGFEPCVVTYTILINGFCKQGRLDEAVEVVNAMWAKGLSLNTVGYNCLISAVCKDGRTEEALQLFGEMSSKGCKPDIYTFNSLIFGMCNDDKMEEALRLYRDMFMEGVIANTVTYNTLIHAFIRRGAIQQAFKLVDEMIFRGCPLDNITYTTLIKALCMAGEVEKGLAFFEEMLGKGIFPDTNCCNILINAFCRIGKVTSRRNASRCYHVWITGSCPMKSPDYTGSPFESIDFSHVKLESQQFFSVQHQFSISNCTDLMYKARGTWMLKRGEDVLVLVQLR 1641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00502 1641 PANTHER AUXIN RESPONSE FACTOR 6 1 872 - -
Aip07g00502 1641 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Aip07g00502 1641 Gene3D Tetratricopeptide repeat domain 1381 1489 IPR011990 GO:0005515
Aip07g00502 1641 Gene3D Tetratricopeptide repeat domain 1193 1277 IPR011990 GO:0005515
Aip07g00502 1641 Gene3D Tetratricopeptide repeat domain 1278 1380 IPR011990 GO:0005515
Aip07g00502 1641 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Aip07g00502 1641 SUPERFAMILY CAD & PB1 domains 754 841 - -
Aip07g00502 1641 CDD B3_DNA 128 229 IPR003340 GO:0003677
Aip07g00502 1641 ProSiteProfiles PB1 domain profile. 763 847 IPR000270 GO:0005515
Aip07g00502 1641 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 872 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aip07g00502 1641 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Aip07g00502 1641 Pfam PPR repeat 1297 1319 IPR002885 -
Aip07g00502 1641 Pfam PPR repeat 1056 1085 IPR002885 -
Aip07g00502 1641 Pfam AUX/IAA family 753 845 IPR033389 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1438 1471 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1473 1506 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1333 1365 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1298 1331 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1267 1290 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1197 1230 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1405 1437 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1508 1542 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1056 1086 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1162 1195 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1232 1265 IPR002885 -
Aip07g00502 1641 TIGRFAM PPR: pentatricopeptide repeat domain 1368 1401 IPR002885 -
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1229 1263 IPR002885 -
Aip07g00502 1641 Pfam PPR repeat family 1193 1242 IPR002885 -
Aip07g00502 1641 Pfam PPR repeat family 1126 1171 IPR002885 -
Aip07g00502 1641 Pfam PPR repeat family 1471 1518 IPR002885 -
Aip07g00502 1641 Pfam PPR repeat family 1330 1379 IPR002885 -
Aip07g00502 1641 Pfam PPR repeat family 1401 1449 IPR002885 -
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1366 1400 IPR002885 -
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1401 1435 IPR002885 -
Aip07g00502 1641 SMART B3_2 129 231 IPR003340 GO:0003677
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1471 1505 IPR002885 -
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1436 1470 IPR002885 -
Aip07g00502 1641 Gene3D - 759 852 - -
Aip07g00502 1641 Gene3D - 127 230 IPR015300 -
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1194 1228 IPR002885 -
Aip07g00502 1641 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1331 1365 IPR002885 -
Aip07g00502 1641 Gene3D - 293 365 - -
Aip07g00502 1641 Gene3D Tetratricopeptide repeat domain 1499 1564 IPR011990 GO:0005515
Aip07g00502 1641 Gene3D Tetratricopeptide repeat domain 1032 1189 IPR011990 GO:0005515
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1264 1294 IPR002885 -
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1295 1330 IPR002885 -
Aip07g00502 1641 Pfam PPR repeat 1259 1290 IPR002885 -
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1506 1540 IPR002885 -
Aip07g00502 1641 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1159 1193 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00502 Aip-Chr7 4344445 4354860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00502 98 852 B3 DNA Binding Superfamily AT5G37020 54.796 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aip07g00502 AUX_IAA 2.7e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00502 - - gmx:100810798 1544.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00502 07 4344445 4354860 Aip07g00502 07 4344445 4354860 ECH