Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00479 ATGGATGTGGCTAAGTTGTACATGAACAACGACTACTCCGAAGAACATGAACATGAACATGAAGATGAAGATCATGAGATGATGAAAGAGGAGAAAGAAGTTGTGCTTCCTGGGTTTAGATTCCACCCAACAGATGAAGAGCTTGTTGGGTTTTATCTTCGGAGGAAGGTTGAGAAGAAGCCTCTTAAGATTGAACTTATCAAACATGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAAGTTGGTTCATCAATGGGGGAGAAGGAATGGGAATTGGTTTATTACCGGGGAAGTGCTGGAAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTCCCACCCAATAATAATAATGGAGCAAAATTATTAAGCAATAATCAAGAAGCTAATAATGCTACCAAGGATCTTCATGAAGCTGAAGTGTGGACACTATGCAGAATATTCAAAAGGATTCCAACATACAAAAAGTACACACCAAATTTGAAAGATTCATCAACATCACCACTGATGAACAAACCCATCAATAACATTAACCACCAAACTGATTCCTCAGTAACTTCCATATCATGCAGCTTAGAATCTGACAACAACAATAGCAAGCCATTCTTGACTTTCACTAACACTATGACTATGGGCATTCAACAATGTGAAAGGAAGCCTCTTGTTATTGGACATGTTGATGAAAGGAACAACAACTTTTTCTTAGACCATTCATCAATACATCATCAACAAGCTCCAACAACAATTACTACTACTGCTTTGTCATCATCATCATACTCATCATGGAACCAGCACCATCTTGTGGAGGATTACTTGTTTGCAAATGAGAATTGGGATGATCTTAGATCTGTGGTTGAGTTTGCCACTGACCCTAATAATTCCAAGGTTTATCTATGA 909 0.3817 MDVAKLYMNNDYSEEHEHEHEDEDHEMMKEEKEVVLPGFRFHPTDEELVGFYLRRKVEKKPLKIELIKHVDIYKYDPWDLPKVGSSMGEKEWELVYYRGSAGKGTKTDWMMHEFRLPPNNNNGAKLLSNNQEANNATKDLHEAEVWTLCRIFKRIPTYKKYTPNLKDSSTSPLMNKPINNINHQTDSSVTSISCSLESDNNNSKPFLTFTNTMTMGIQQCERKPLVIGHVDERNNNFFLDHSSIHHQQAPTTITTTALSSSSYSSWNQHHLVEDYLFANENWDDLRSVVEFATDPNNSKVYL 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00479 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 94 296 - -
Aip07g00479 302 Coils Coil 13 33 - -
Aip07g00479 302 SUPERFAMILY NAC domain 32 153 IPR036093 GO:0003677|GO:0006355
Aip07g00479 302 MobiDBLite consensus disorder prediction 1 26 - -
Aip07g00479 302 Pfam No apical meristem (NAM) protein 37 92 IPR003441 GO:0003677|GO:0006355
Aip07g00479 302 PANTHER - 20 92 - -
Aip07g00479 302 Gene3D NAC domain 94 157 IPR036093 GO:0003677|GO:0006355
Aip07g00479 302 PANTHER - 94 296 - -
Aip07g00479 302 MobiDBLite consensus disorder prediction 9 26 - -
Aip07g00479 302 Gene3D NAC domain 44 93 IPR036093 GO:0003677|GO:0006355
Aip07g00479 302 ProSiteProfiles NAC domain profile. 35 176 IPR003441 GO:0003677|GO:0006355
Aip07g00479 302 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00479 Aip-Chr7 4101211 4104842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00479 21 154 NAC Transcription Factor Family AT5G39820 43.979 3.63e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip07g00479 NAM 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00479 - - ahf:112767137 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00479 07 4101211 4104842 Aip07g00479 07 4101211 4104842 ECH