Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00434 ATGGACAAACATTCTGGGGATTCTGCGCCAGCTCATGGTGCCACAGGTTCATCTGGGATTTCCTCACTTAGTGTTGGTAGAAAGGTGGGAAGCAGTGCATGGGGAATACCACGCGGCACTGCTGCATTTCATGCATCAAGTGACACTAGCTTGTTCTCCAGTTCGCTTCCTGTTCTTGGGCATGAAAAGTTAAATTTGACTGGTTCGGGACATTATGATCGATCTGCTGATGATAACTGGCCAAGATTAGGGAAAGTTCATAAAGATGATGTGGGGCAAGATGCACTTGAAGATATGGAAACAAAAGCAGTTGGAAAGATGCTTCCTGATGATGAAGATGAATTGTTAGCTGGGATAATGGAAGATTTTGACCTTACCAGGTTGCCGAGTCAGCTAGAGGATCTGGATGAGAATGATCTTTTTGGAAGTGTAGGAGGCTTTGAAATGGATTTTGAATCCCAAGAGAGCCTTGGTATTGGTATATCAAAGATGAGCTTATCCGATGGAGTTCCTTCAACGGCTATCGGTCAATATGCTGCACTGCCAAATGGCGTTGGAGCAGTGGCCGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACCTTGTTTGTGAGGAACATCAACAGTAATGTGGAGGATTCTGAATTAAGATTGCTATTTGAGCAATATGGGGATATCAGAACATTGTACACTGCTTGCAAGCATAGGGGTTTTGTAATGATATCTTACTATGACATTCGAGCTGCTCGCACAGCAATGCGTGCTTTGCAGAACAAGCCTTTGAGAAGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCTTCTGAAAAGGATATCAACCAAGGAACACTTGTAGTATTCAATTTGGATCCATCAGTATCAAATGATGATCTTCGCCAAATATTTGGGGCTTATGGAGAAGTCAAGGAGATTAGGGAAACACCACATAAAAGACACCATAAATTTATCGAGTTTTATGATGTTAGAGCAGCAGAGGCTGCTCTTAAAGCATTGAATAGAAGTGATATTGCTGGAAAACGTATCAAACTTGAACCCAGCCGTCCCGGTGGAGCACGTCGAAACTTGATGCAACAATTGAGTCAAGAGCTAGAGCAAGATGATGCTCGAACTTTCAGACATCATGGGGGTTCACCTGTAGCTAGTTCACCTCCCGGTAACTGGGCACAATTTGGTAGCCCGGTTGAACATAGTCCATTACATTCTTTTAGCAAAACCCCAGGTTTGAATATTGGCAGCCCAATGAATACCAACCAGATGTCTGGATTGGCTGCAATTCTTTCGCCACATGCATCAACCTCTTCAAAAATTGCACCAATTGGAAAAGACCCTGGAAGAACTAATAATCCAAATCCGATATTCGGAAGCTCTGGACCAATACAAGGAGCTGGCTTTCAGCATTCTATGTCCTTCCCTGATCAAAAAGTAACCGCAAGTCCTAGGCCTATATCTACTGTTGGCGAATCAAGTTCGAGTTCTTCGAGTATTGGAATGTTGTCTGGTCCTCAATTTTTGTGGGGAAGTCCAACTACCTACTCGGAACGTTCAAACACATCTGCTTGGTCTTCATCATCTCAGGGGCTTCCATTTAATTCTAGTGGACAAAGGCAGGGTTTCCCTTATACTAGTCGGCACAATTCTTTTCTTGGTTCTCACCTCCATCACCATGTTGGTTCTGCTCCATCTGGTCTTACTTTCGATAGGCAGTTTAGCTACTTTCCCGAGTCACATGAAACTTCAATCAAGAGCTCAAATGCATTTGGGAGTTTAAATCACGGTGATGGGAATTTCTTGATGAACATGGGTCCTCATGCATCTCTAGGAGCTGGTGTTGGCCTTTCAGGAAATGCAACCGAAATTGGTTCGCCTAATTTCAGAATGATGTCACCACTGCCTAGACATGGTTCATTGTTCCTTGGAAATGGTTCATATTCTGGACTAGGAGCAGCTAACTCTGAGTTGTTAACTGAACGTGGTAGAACTAGGCGACCTGATAATAATGGGAACCAAATTGATGGCAAGAAGCAGTACCAGCTTGATCTGGACAAAATTATGAGCGGGGAAGACACAAGGACTACATTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGCTCCTTGCTGCAATTGATGAGGATCACATGGGAAGCTATGACTTTTTGTATTTGCCGATTGACTTTAAGAACAAGTGTAATGTGGGCTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATCCCCTTCTATAAGGCATTTAATGGGAAGAAGTGGGAAAAGTTCAACAGCGAAAAAGTTGCTTCACTTGCTTATGCGCGAATCCAAGGAAAGGGTGCACTTGTGACACATTTTCAGAATTCAAGCCTAATGAATGAGGATAAACGGTGTCGGCCAATTCTCTTCCATTCAGAGGGCCAAGAGATTGGTGACCAGGAACATTTCCTCTCAAGCAATTTGAATATATGTATTCGTCAACCGGATGGGTCTTACTCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATTCGGATGAAAACTAG 2571 0.4306 MDKHSGDSAPAHGATGSSGISSLSVGRKVGSSAWGIPRGTAAFHASSDTSLFSSSLPVLGHEKLNLTGSGHYDRSADDNWPRLGKVHKDDVGQDALEDMETKAVGKMLPDDEDELLAGIMEDFDLTRLPSQLEDLDENDLFGSVGGFEMDFESQESLGIGISKMSLSDGVPSTAIGQYAALPNGVGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRLLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDDARTFRHHGGSPVASSPPGNWAQFGSPVEHSPLHSFSKTPGLNIGSPMNTNQMSGLAAILSPHASTSSKIAPIGKDPGRTNNPNPIFGSSGPIQGAGFQHSMSFPDQKVTASPRPISTVGESSSSSSSIGMLSGPQFLWGSPTTYSERSNTSAWSSSSQGLPFNSSGQRQGFPYTSRHNSFLGSHLHHHVGSAPSGLTFDRQFSYFPESHETSIKSSNAFGSLNHGDGNFLMNMGPHASLGAGVGLSGNATEIGSPNFRMMSPLPRHGSLFLGNGSYSGLGAANSELLTERGRTRRPDNNGNQIDGKKQYQLDLDKIMSGEDTRTTLMIKNIPNKYTSKMLLAAIDEDHMGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILFHSEGQEIGDQEHFLSSNLNICIRQPDGSYSGDLLESPKGNSDEN 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00434 856 PANTHER PROTEIN MEI2-LIKE 2 12 854 - -
Aip07g00434 856 MobiDBLite consensus disorder prediction 1 25 - -
Aip07g00434 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 358 IPR000504 GO:0003723
Aip07g00434 856 PANTHER RNA RECOGNITION MOTIF-CONTAINING 12 854 - -
Aip07g00434 856 Gene3D - 189 283 IPR012677 -
Aip07g00434 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 266 IPR000504 GO:0003723
Aip07g00434 856 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 352 IPR000504 GO:0003723
Aip07g00434 856 CDD RRM1_MEI2_like 199 275 IPR034453 -
Aip07g00434 856 SUPERFAMILY RNA-binding domain, RBD 702 786 IPR035979 GO:0003676
Aip07g00434 856 MobiDBLite consensus disorder prediction 524 552 - -
Aip07g00434 856 SUPERFAMILY RNA-binding domain, RBD 197 360 IPR035979 GO:0003676
Aip07g00434 856 MobiDBLite consensus disorder prediction 469 505 - -
Aip07g00434 856 MobiDBLite consensus disorder prediction 11 25 - -
Aip07g00434 856 Pfam RNA recognition motif 2 700 796 IPR007201 -
Aip07g00434 856 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Aip07g00434 856 CDD RRM3_MEI2_like 703 788 IPR034454 -
Aip07g00434 856 SMART rrm1_1 286 354 IPR000504 GO:0003723
Aip07g00434 856 SMART rrm1_1 201 269 IPR000504 GO:0003723
Aip07g00434 856 SMART rrm1_1 702 778 IPR000504 GO:0003723
Aip07g00434 856 CDD RRM2_MEI2_like 284 354 - -
Aip07g00434 856 Gene3D - 284 382 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00434 Aip-Chr7 3753619 3759253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00434 195 393 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 1.85e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00434 - - gmx:100812324 1383.62