LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip07g00423	ATGGAACTTCCAAATCAAGCACCGGAAGAAGGATCCTCACAACATCAGAAGAAGATGGGGAGAGGCAAGATTGAGATCAAGAGGATTGAAAACACTACCAACCGCCAAGTCACGTTCTGTAAGCGCCGCAACGGCTTGCTCAAGAAAGCTTATGAGCTCTCCGTCCTCTGTGACGCCGAGGTGGCCCTCGTCGTCTTCTCCAGCCGCGGCCGCCTCTACGAGTACGCCAACAACAGTGTTAGAGGAACTATCGAAAGGTATAAGAAAGCAAGTGCTGCTTCCTCAAACACAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCCAAATTAAGAAGACAGATTCGTGATATTCAAAATCTAAATAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGCCTCAAGGAACTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTAAGCAGAGTTCGATCTAGAAAGCATGAAACATTGTTTGCTGATGTGGAGTTCATGCAAAAGAGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCACAGCAGCAACAACAACAGGAACAAGAACAGCAAAATTTGATGCATGGGAACATGTGTGAAGATCAGTCCACCATAGCGTCACAAACATATGACAGGAATTTCTTCCCAATAAATCTCTTAGATTCCAATAATCATCAATATTCACGCCAAGATCACACTGCACTCCAGCTTGTCTGA	762	0.4383	MELPNQAPEEGSSQHQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIERYKKASAASSNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQEQEQQNLMHGNMCEDQSTIASQTYDRNFFPINLLDSNNHQYSRQDHTALQLV	253

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip07g00423	253	Gene3D	-	31	130	IPR036879	GO:0003677\|GO:0046983
	Aip07g00423	253	MobiDBLite	consensus disorder prediction	1	25	-	-
	Aip07g00423	253	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	28	75	IPR002100	GO:0003677\|GO:0046983
	Aip07g00423	253	SUPERFAMILY	SRF-like	20	97	IPR036879	GO:0003677\|GO:0046983
	Aip07g00423	253	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	13	244	-	-
	Aip07g00423	253	ProSitePatterns	MADS-box domain signature.	21	75	IPR002100	GO:0003677\|GO:0046983
	Aip07g00423	253	ProSiteProfiles	K-box domain profile.	105	195	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aip07g00423	253	ProSiteProfiles	MADS-box domain profile.	19	79	IPR002100	GO:0003677\|GO:0046983
	Aip07g00423	253	PANTHER	MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN	13	244	-	-
	Aip07g00423	253	Coils	Coil	139	159	-	-
	Aip07g00423	253	PRINTS	MADS domain signature	21	41	IPR002100	GO:0003677\|GO:0046983
	Aip07g00423	253	PRINTS	MADS domain signature	41	56	IPR002100	GO:0003677\|GO:0046983
	Aip07g00423	253	PRINTS	MADS domain signature	56	77	IPR002100	GO:0003677\|GO:0046983
	Aip07g00423	253	SMART	madsneu2	19	78	IPR002100	GO:0003677\|GO:0046983
	Aip07g00423	253	Coils	Coil	178	207	-	-
	Aip07g00423	253	Coils	Coil	108	128	-	-
	Aip07g00423	253	CDD	MADS_MEF2_like	20	96	IPR033896	GO:0000977\|GO:0045944
	Aip07g00423	253	Pfam	K-box region	103	189	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip07g00423	Aip-Chr7	3618367	3630548	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip07g00423	9	253	MADS-box Gene Family	AT3G58780	68.651	1.29e-116	332

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aip07g00423		K-box	7.8e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip07g00423	K09264		-	gmx:100792224	393.275

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip01g00166	01	1673814	1681119	Aip07g00423	07	3618367	3630548	PCT