Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00313 ATGGTGGCAACAAGGTGCAAGGAGGTTTTCTTTGGAATATTCATGGCAGCCATGGAGACACTTCTTTATGCTGCATTCACTCTTATTCTAGCACTAGGAGGTTCAATAGTAGGAACAATAGCAGGAGGAATCAAAGGGCAAACAACAGAAGCTGGTTTTCTTGATGGAGCTGGCAAAGGAGCAGTTACAGGAGCCATTGCTGCCATTGAATTGCTGAACTCTAGAGCCATTGATGACCCTTTAACCAAGATGAACACAGCAGAAACAAGTTCACAGAGAGAAGTATCATCAAATATTTATGAAAACAAAGGGGTTACAGGGATGGCACAGAGTGTAATTCTGAATCTTCCATTTCAGAAATTTAAATCCAAGAAACTAATGTACATGTCAAGCTGCTCAATTTGCTTCCAGGATTTTGAGGATGAAGAATTGATTAGGATACTTCCAAAATGTGGCCACATTTTTCATTTACAATGTATAGACAAATGGTTAATCCAACAAGGATCATGCCCTATGTGTAGAACTCATGTTTCTTCTTATCACATTCATCACTTGTAG 558 0.3925 MVATRCKEVFFGIFMAAMETLLYAAFTLILALGGSIVGTIAGGIKGQTTEAGFLDGAGKGAVTGAIAAIELLNSRAIDDPLTKMNTAETSSQREVSSNIYENKGVTGMAQSVILNLPFQKFKSKKLMYMSSCSICFQDFEDEELIRILPKCGHIFHLQCIDKWLIQQGSCPMCRTHVSSYHIHHL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00313 185 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Aip07g00313 185 CDD RING-H2_PA-TM-RING 132 174 - -
Aip07g00313 185 Pfam Ring finger domain 131 174 IPR001841 -
Aip07g00313 185 SMART ring_2 132 173 IPR001841 -
Aip07g00313 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 180 IPR013083 -
Aip07g00313 185 SUPERFAMILY RING/U-box 131 180 - -
Aip07g00313 185 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 84 177 - -
Aip07g00313 185 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 84 - -
Aip07g00313 185 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 5 84 IPR044523 -
Aip07g00313 185 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 84 177 IPR044523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00313 Aip-Chr7 2865246 2867997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00313 2 177 C3H Transcription Factor Family AT5G66070 31.944 8.71e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00313 - K19041 gmx:100305612 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00313 07 2865246 2867997 Aip07g00313 07 2865246 2867997 ECH