Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00301 ATGATTTCTGGAAGATGTGCTGCTTGCAAGAATCAAAGAAGAAAATGCCCTTCTGATTGCATATTTTCTCCATATTTTCCTGCCAATGATCCTCAAAAATTTGCTTGTGTCCACAAAATCTATGGTGGCAGTAATGTTGGAAGAATGCTTCAGGGAATTCCAACCTATCTAAGAGAACAAGCTGCAAATGCATTGTATTTAGAAGCAAAATGGAGGATTCATGACCCTGTTTATGGGTGTGTTGGCATTATCTCTTCATTGTATGAACAAATTCAAAATGCAGAAATTGAACTAGCAAAAATTCAAACTCAGATTACTTTCTACAAGCTCCAAACCCAACGTGTTGAAGCTGAACCAAATTCGGAAGTTTTGCAAGCACAAAGCAGCAATATGGAGCAGTTTGAGTGGGACAATCCAACTATAGCTTCTTGGTTCAATTGA 441 0.3787 MISGRCAACKNQRRKCPSDCIFSPYFPANDPQKFACVHKIYGGSNVGRMLQGIPTYLREQAANALYLEAKWRIHDPVYGCVGIISSLYEQIQNAEIELAKIQTQITFYKLQTQRVEAEPNSEVLQAQSSNMEQFEWDNPTIASWFN 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00301 146 Coils Coil 141 146 - -
Aip07g00301 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 118 - -
Aip07g00301 146 Pfam Lateral organ boundaries (LOB) domain 5 102 IPR004883 -
Aip07g00301 146 ProSiteProfiles LOB domain profile. 4 105 IPR004883 -
Aip07g00301 146 Coils Coil 84 111 - -
Aip07g00301 146 PANTHER LOB DOMAIN-CONTAINING PROTEIN 23-RELATED 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00301 Aip-Chr7 2741871 2755228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00301 1 105 AS2 family AT3G26660 61.905 1.86e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip07g00301 LOB 1.9e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00301 - - gmx:100790640 206.453