Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00248 ATGACGATGACCGCTGCGCCAAGAAGCCTAAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCGGGCGGGTCGGAAACCTACCGACGTGGAGGTGGAGCTTATGAGGGAGGCTCGGAGCAAGCTCGCCGAACTCTGCGTAGGGCTCGCGCCGAAGGATATCGTTGGGAGGGAAGCGATTGGGACGGTGATTGAGGATCTTGGATTGAACGGCAGGGTTAGGGATCAGAGGTTAGGGTTTCGAACTCCAAAGATGTCAATTGCTGAGAGGTATACGCATGCTAAGTGGAAGATGGAAGAAGCAAAGAGGTATGCTGCACCTTCTACAACGTACACATCTCAGCCTGTGCAACCAAGTACCAGTGTAACAGCTGACAACCGTGTGGCTCCACATGGTGTTCGTGTGTTTGCACCTGATAATTCAAGCCACATAGCGATCCCTTCTTCGGCAACAACGGTGTCTATTCCTTCTCATGTTTCTGCAGGATCGTCTTCTACGTCGCAATATCAGTCGACTAGCAATGAAGTAAGACCACCTATGGTTTCTGGTGCAATACCTAGCACTCATCTCGGGAGAAATTCATCTCCGATGGTAGTGCCTAAACTTGAAAACCCACAGGTCAGAGCTGATGGAGGATCAAATGGATCTTCTTATGTGCTTAGTATACCAGCAAATTCATCAGCAAACCAACCTTTGGCAAATGCTCCACCATGGTCAATACAGACTCAATCTGCGTCGTTAGCTAGAACAGCATTGGAAAACAAGGTGCCTGCTCATAACACTGTCAAGGTACAAGGAACAAGTGATGTAGCTGCTTCAAGGGCAGGTTCACAAATAACAGCAGATCAGAGCTTTAGGCCATTTATTACTCAAACAGCACCTGTAAACTTGTCTACTATGCAACAGTCTTTCCAGGGTATGAACGTTGCTCAGCCTCCTTCAATTCCTACTCATGCTGAAATTGCAAAGATTGTCCAGAAATTGTTACAACCAAAGCTTCCTGAGCATCCGACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACTTGTCAGGTGTGTGAACTCACTGTCAATGAGGTTGATACTGTGCTTCTCTGTGATGCTTGTGAAAAGGGATATCACTTGAAGTGTTTGCAGCCCTCGGTTTTAAGAGGAATTCATAATAGAGTGGATTGGCATTGCATGAGGTGTTTGAATTTAAGCGGTGGAAAGCCTATACCTCCAAAATATGGTCGTGTCATGAGATCATCAAACACACCACCGAAATTGCCCACTACGGTTGGAGTTCAGCAACCTTCTGAGAAGAAAACAGGGAGCTTAGATCCAAAGGTCAGCCAGCAGAATTTAACAACAAATGGGAGCACTGTTCCAATAGTTGCTACCAGCAATGTCAAAGTTGAGTCGCCATCTGATTCAAAGACTCCTGGTACAAAGGATATACATGGTACCGGATCATCCAACACGGAACATATTGATCAGAAGCCTGACCCAAACATCTCTATGAAATCCCTTAATGCAGCTTCTGTTCCTTCCGTTGACTTTCCTGGTGAAAGTTCTGCTCAACAAATTAATCCTGAGCCTTCAACCTGTAAAGAGAGTTCAACCTCTAAAGAGTGTTTCGATTCCAAGACCCTTCCTAAATTATCTGAGCCAGGTGAATGTGACAATTTGCAATCATCACAAGACTTTCAAGCTGAGCAGAAAGTGTCACAGGGCAATGCTGTAGTATTATCGGATAAAAAAGTTGACAGTAGTTTAATGAGTAATGAACAAAAGGAATCACAATCAGGAGAAAGCTCAACTTATGATACCAAGCGAGATGGCCAAGATGTTGCACTAGCAAACTTTGATGGGAGTTCTGGAACTAATGCTGAAGTTAGACAACACTGTGCGTTATCTTCAGATAGCTCGCAAGCTGTAGAATGGATTGGTGATGTTATACACATTGTTGATGAGAAAAAGTTTTACAAATCTTGCTGTGTTGATGGAGTAACCTATAGGCTTCATAGTCATGCTCTTCTCCCATCTGGCCATGGCAAATTAGCACCTTCTAAACTTCAGTCTATGTGGGAAGACTGCAAAACTGGGTTAAAGTGGGTTAAGGTGACGAAATGCTACTTTCCTGGTGATTTGCCTGGGAACATTGGTCATCCGTGTATATCCGAAGTTAACGAGGTTTATGAATCTAATAGTGAAAGAACTGAAAAGGCTAGCTCTATTCGAGGTCCATGTGAAGTCCTTCCATCTGATAAATTTAATCAAGAAAACGACAGACGAAATCAGTTAGGAATTGAGGCAAATGCTAGAATCCAGCCACTTTTTGTTTGCAGGTGGTTTTATGATGAAATCAAAAAGTTATTTCAGCCTGTTACCAGTTGA 2451 0.4235 MTMTAAPRSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRAGRKPTDVEVELMREARSKLAELCVGLAPKDIVGREAIGTVIEDLGLNGRVRDQRLGFRTPKMSIAERYTHAKWKMEEAKRYAAPSTTYTSQPVQPSTSVTADNRVAPHGVRVFAPDNSSHIAIPSSATTVSIPSHVSAGSSSTSQYQSTSNEVRPPMVSGAIPSTHLGRNSSPMVVPKLENPQVRADGGSNGSSYVLSIPANSSANQPLANAPPWSIQTQSASLARTALENKVPAHNTVKVQGTSDVAASRAGSQITADQSFRPFITQTAPVNLSTMQQSFQGMNVAQPPSIPTHAEIAKIVQKLLQPKLPEHPTWTPPSRDYMNKALTCQVCELTVNEVDTVLLCDACEKGYHLKCLQPSVLRGIHNRVDWHCMRCLNLSGGKPIPPKYGRVMRSSNTPPKLPTTVGVQQPSEKKTGSLDPKVSQQNLTTNGSTVPIVATSNVKVESPSDSKTPGTKDIHGTGSSNTEHIDQKPDPNISMKSLNAASVPSVDFPGESSAQQINPEPSTCKESSTSKECFDSKTLPKLSEPGECDNLQSSQDFQAEQKVSQGNAVVLSDKKVDSSLMSNEQKESQSGESSTYDTKRDGQDVALANFDGSSGTNAEVRQHCALSSDSSQAVEWIGDVIHIVDEKKFYKSCCVDGVTYRLHSHALLPSGHGKLAPSKLQSMWEDCKTGLKWVKVTKCYFPGDLPGNIGHPCISEVNEVYESNSERTEKASSIRGPCEVLPSDKFNQENDRRNQLGIEANARIQPLFVCRWFYDEIKKLFQPVTS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00248 816 SMART PHD_3 373 422 IPR001965 -
Aip07g00248 816 Coils Coil 10 11 - -
Aip07g00248 816 MobiDBLite consensus disorder prediction 442 566 - -
Aip07g00248 816 Gene3D - 657 816 IPR043151 -
Aip07g00248 816 MobiDBLite consensus disorder prediction 178 220 - -
Aip07g00248 816 Gene3D - 307 424 - -
Aip07g00248 816 MobiDBLite consensus disorder prediction 432 644 - -
Aip07g00248 816 ProSitePatterns Zinc finger PHD-type signature. 374 421 IPR019786 -
Aip07g00248 816 ProSiteProfiles BAH domain profile. 688 815 IPR001025 GO:0003682
Aip07g00248 816 Pfam PHD-finger 374 422 IPR019787 -
Aip07g00248 816 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 41 815 - -
Aip07g00248 816 MobiDBLite consensus disorder prediction 178 199 - -
Aip07g00248 816 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 41 815 - -
Aip07g00248 816 ProSiteProfiles Zinc finger PHD-type profile. 371 424 IPR019787 -
Aip07g00248 816 CDD BAH 687 815 - -
Aip07g00248 816 MobiDBLite consensus disorder prediction 577 622 - -
Aip07g00248 816 SUPERFAMILY FYVE/PHD zinc finger 364 429 IPR011011 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip07g00248 PHD 9.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00248 - - aip:107609239 1551.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00248 07 2084395 2089500 Aip07g00248 07 2084395 2089500 ECH