Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00231 ATGAGGGATCGGACAACGGGTCGTGCTCGTGGATTCGGCTTTATTGTCTTTGCTGATCTTGCTGTTGCAGAAAGAGTAATTATGGATAAACATGTAATCGATGGCCGCACGGTTGAAGCAAAGAAGGCTGTTCCCAGAGATGATCAGCAAGCTATAAATAGGCAGTCTGCTAGCATGCAGGGATCTCCTAGTCCTGGTCGCACGAAGAAAATCTTCGTTGGAGGTTTACCATCAACGATCACGGAAAGTGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAGAGGCCAAGAGGATTTGGCTTCATCACTTATGATTCGGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAATGGGAAGTTGGTTGAGGTCAAGAGGGCAGTTCCGAAAGATCTTTCTCCTGGACCCAATCGGAGCCCATTGATAGGATATAACTATGGTTTGAATAGGACAAGTAGCTACCTAAACAGTTATGCTCAGGGTTTTAATATTAATCCGATAGGAGGCTATGGCGTAAGGATGGATGGTAGATTTAGTCCACTTTCTAGTGGTAGAAGCAGTTTTACCCCATTTGGATCTAGTGGTTATGGAATGGGAGTGAATTTGGAATCAGCATTGAGTCCAAACTATGGAGGAACTTCCAATTATGGGGGAAATATAGGGTACGGTCGAATATTTAGTCCTTTCTATAGTGGCAATTCAAGCAGGTACACTACTCCTATTGGCTTTAGTGGGGGCAATGCAAGAAGCGACACTCTTACGAACTCAGCTTCTAGGAATGTCTGGGGAAATGGTGGCCTGAATACTACGACTAATAACCCCGTCAGCCCTGGTGCTTACTTGGGATCAGGAAGTGGGGCTTTCGGTGTTTCAATTGGAAATAGTGGTACCAATTGGGGTCCATCAGTTCCAACGCAGGGTGGGGGGGCTGCTTCCGGCTATGCTACTTGGAGCAATGTTTATGCCGGTGGAGATAGTAGCATAGGATTAGGAGGAGGAGGAGGGTATGGAAGGAACACCGGCACAAATGCGACCCAGTCCTCTACATTTGCTGCACCAAACAGTGTTTATGATGGACCCTATGGGGAGTTATACCGCAGTGGTTCTGCTTACAATGACTCTACTTGGCGGTCCGCTGCTTCTGAGGTAGATGGTTCTGGTGCATTTGGTTATGGTCTTGGCGGCATTGTTTCGGATGATCCAGTGAAGAGCTCTGAGGGTTTTATTGGGAATTACAATGTAACAAGTAGACAATCTAATAGAGGAATTGCTGCTTAG 1329 0.4522 MRDRTTGRARGFGFIVFADLAVAERVIMDKHVIDGRTVEAKKAVPRDDQQAINRQSASMQGSPSPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKLVEVKRAVPKDLSPGPNRSPLIGYNYGLNRTSSYLNSYAQGFNINPIGGYGVRMDGRFSPLSSGRSSFTPFGSSGYGMGVNLESALSPNYGGTSNYGGNIGYGRIFSPFYSGNSSRYTTPIGFSGGNARSDTLTNSASRNVWGNGGLNTTTNNPVSPGAYLGSGSGAFGVSIGNSGTNWGPSVPTQGGGAASGYATWSNVYAGGDSSIGLGGGGGYGRNTGTNATQSSTFAAPNSVYDGPYGELYRSGSAYNDSTWRSAASEVDGSGAFGYGLGGIVSDDPVKSSEGFIGNYNVTSRQSNRGIAA 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00231 442 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 442 - -
Aip07g00231 442 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 130 IPR000504 GO:0003723
Aip07g00231 442 MobiDBLite consensus disorder prediction 44 68 - -
Aip07g00231 442 SMART rrm1_1 70 142 IPR000504 GO:0003723
Aip07g00231 442 SUPERFAMILY RNA-binding domain, RBD 68 179 IPR035979 GO:0003676
Aip07g00231 442 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 442 - -
Aip07g00231 442 CDD RRM2_DAZAP1 67 146 IPR034131 GO:0003723
Aip07g00231 442 MobiDBLite consensus disorder prediction 49 65 - -
Aip07g00231 442 Gene3D - 1 48 IPR012677 -
Aip07g00231 442 SUPERFAMILY RNA-binding domain, RBD 1 66 IPR035979 GO:0003676
Aip07g00231 442 Gene3D - 49 157 IPR012677 -
Aip07g00231 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 146 IPR000504 GO:0003723
Aip07g00231 442 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 45 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00231 Aip-Chr7 1991896 1994241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00231 5 122 Eukaryotic Initiation Factors Gene Family AT1G22760 33.065 7.63e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00231 K14411 - gmx:100788515 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00231 07 1991896 1994241 Aip07g00231 07 1991896 1994241 ECH
Aip01g00601 01 9087828 9090681 Aip07g00231 07 1991896 1994241 PCT