Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00224 ATGGTTTCCATATTCTCTCTCTATCCCTGCAATCCCCTCCTCTATTCTTCTTCTTCTTCCTTTCGGAACTTTGTTGAATGGCATTTCAATCCGAGTTCGAGTTCGAATTCGAATTCTGCGTCTTCATCCATTGACGGAAGAGGAGGTGGTGGCGGTGGCAGCAAGGTGCTGCTTGTGATTGCTGCGGCGCATTCCAATCCAAACATTCTCAAGACCAACCGCAAGTCTAAGTACGGTTACCCTCTCTCTACCTACGATTCCGACGACGACGACGAGGACGACGACGACGAGGACGGTGATTGGCTCTCTGATGAAGAATTTGCTGAGCCTGCTCGCTTGGACACTAATGGCAAGAGATCTAAGTTGCATGCAAGTAAAGGAAAAGAAAGACAAAATGAAAAGGAATGGGGTGTAAGAGATTTTGATAATGAACCAAGCACTAGAATTCGCGGAAGCGAGGGAGTGGCATCTTTACGGCGAAACTACAATGGAAAGCTTGATAAGAACTTAAAGGAGAAGAAATATCCACGGCTGTCGGAAGAGATTATCTTGGATTCGAAATGGTTACCGCTTCTTGATTACTTAAGCACCTTTGGAATCAAGGAGTCACACTTCGTCCAGATGTATCAGAGGCACATGCCGTCACTTCAAATCAATGTATGCTCTGCACAGGAGAGGTTAGATTACTTAATGAGTGTCGGTGTCAAACATAGAGATGTTAGAAGAATCCTTGTGAGGCAGCCTCAGATTCTGGGGTATACGGTGGAGAACAATTTGAAGTCTCATGTTGCTTTCTTGGCAGGCTTGGGAATACCAAGTTCCAGGATAGGGCAAATCATTGCCGTCGCTCCATCGCTTTTTTCTTATAGTGTTGAAAATTCATTAAAACCGACAGTAAGATATTTAGTTGAGGAAGTTGGAATCAAGGAAAGAGACTTGGGTAAGGTCATTCAGCTAAGCCCACAAATTCTTGTCCAGCGCATTGACGTTTCATGGAATACTCGATACATGTTTCTAACCAAAGAGTTGGGAGCACCCAAAGATAGCATAGTGAAGATGGTGACGAAACATCCTCAGCTTCTCCACTACAGCATAGATGATGGATTACTTCCAAGGATAAACTTCCTAAGAAGCATAGGAATGAAAAATTCAGACATCTTGAAAGTATTGACTAGTCTTACACAGGTGCTATCTCTGTCCCTAGAGGACAATCTGAAGCCCAAGTATTTGTACTTGGTAAATGAACTCAACAATGAGGTGCAATCCTTGACCAAATACCCAATGTACCTTAGCTTGTCTTTGGACCAAAGAATCCGTCCTCGTCATAGGTTCTTGGTTTCCTTGAAGAAAGCTCCGAAAGGACCCTTTCCACTTGGATCTCTTGTTCCAACTGATGAATGCTTTTGTCAACAGTGGGCTGGAACTAGTTTGGATAAATATTTGGCATTTCGTCAAAGATTATTAGTCAGAAGGTTTGCCGAGAAATTCGAAAGAAAAATGTGA 1503 0.4325 MVSIFSLYPCNPLLYSSSSSFRNFVEWHFNPSSSSNSNSASSSIDGRGGGGGGSKVLLVIAAAHSNPNILKTNRKSKYGYPLSTYDSDDDDEDDDDEDGDWLSDEEFAEPARLDTNGKRSKLHASKGKERQNEKEWGVRDFDNEPSTRIRGSEGVASLRRNYNGKLDKNLKEKKYPRLSEEIILDSKWLPLLDYLSTFGIKESHFVQMYQRHMPSLQINVCSAQERLDYLMSVGVKHRDVRRILVRQPQILGYTVENNLKSHVAFLAGLGIPSSRIGQIIAVAPSLFSYSVENSLKPTVRYLVEEVGIKERDLGKVIQLSPQILVQRIDVSWNTRYMFLTKELGAPKDSIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSDILKVLTSLTQVLSLSLEDNLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCQQWAGTSLDKYLAFRQRLLVRRFAEKFERKM 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00224 500 Pfam mTERF 175 447 IPR003690 GO:0003690|GO:0006355
Aip07g00224 500 SMART mt_12 387 419 IPR003690 GO:0003690|GO:0006355
Aip07g00224 500 SMART mt_12 277 309 IPR003690 GO:0003690|GO:0006355
Aip07g00224 500 SMART mt_12 241 272 IPR003690 GO:0003690|GO:0006355
Aip07g00224 500 SMART mt_12 420 451 IPR003690 GO:0003690|GO:0006355
Aip07g00224 500 SMART mt_12 314 346 IPR003690 GO:0003690|GO:0006355
Aip07g00224 500 SMART mt_12 351 382 IPR003690 GO:0003690|GO:0006355
Aip07g00224 500 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF9, CHLOROPLASTIC 49 492 - -
Aip07g00224 500 Gene3D Transcription termination factor 3, mitochondrial 252 487 IPR038538 -
Aip07g00224 500 MobiDBLite consensus disorder prediction 85 104 - -
Aip07g00224 500 MobiDBLite consensus disorder prediction 80 136 - -
Aip07g00224 500 PANTHER CGI-12 PROTEIN-RELATED 49 492 IPR003690 GO:0003690|GO:0006355
Aip07g00224 500 MobiDBLite consensus disorder prediction 105 136 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aip07g00224 mTERF 1.4e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00224 K15032 - gmx:100809638 722.235