Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00105 ATGGCCACCTCTGCCATCCAGCAATCTGCATTCACCGGCCAAACTGCCTTGAAGCAAGGAAATGAACTTCTCCGCAAGATTGGTGGCGCCGGCAAAGGCCGCATTAACATGCGTCGTACCGTGAAGAGTACCCCTCAAAGCATTTGGTATGGACCTGACCGTCCCAAGTACTTGGGTCCATTCTCCGACCAAATCCCCTCATACTTGACCGGAGAATTCCCCGGTGACTACGGATGGGACACTGCCGGATTATCTGCAGACCCAGAGACCTTTGCAAGGAACCGTGAGCTGGAAGTGATTCACAGCAGATGGGCCATGCTTGGTGCACTTGGATGCACATTCCCAGAAATCCTTGAAAAGAATGGTGTCAAGTTTGGTGAGGCTGTTTGGTTCAAGGCTGGAGCACAGATCTTCTCAGAGGGTGGCCTTGACTACTTGGGGAACCCGAATTTGATCCATGCTCAGAGCATTCTTGCAATCTGGGCTGTCCAGGTTGTGCTCATGGGATTTGTTGAAGGCTACAGAGTTGGTGGAGGGCCTCTTGGTGAAGGACTAGACCCAATTTACCCTGGTGGTGCCTTTGATCCTCTTGGTTTGGCCGATGACCCCGAAGCATTCGCCGAGTTGAAGGTGAAGGAACTCAAGAATGGCCGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTTACTGGCAAGGGACCTATTCAGAACCTGTTTGACCATGTTGCTGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACTAACTTTGTCCCTGGACAATAA 798 0.5125 MATSAIQQSAFTGQTALKQGNELLRKIGGAGKGRINMRRTVKSTPQSIWYGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLFDHVADPVANNAWAYATNFVPGQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00105 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Aip07g00105 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Aip07g00105 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Aip07g00105 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Aip07g00105 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 2.1, CHLOROPLASTIC-RELATED 1 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00105 Aip-Chr7 802894 804490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00105 1 265 Chloroplast and Mitochondria Gene Families AT2G05070 88.302 1.54e-180 495
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00105 K08913 - gmx:100815789 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00105 07 802894 804490 Aip07g00105 07 802894 804490 ECH