Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00088 ATGCAGGCATCAGAGCATCATAGAAGTTCAAGTATGTACTATCAACCAATGCAGCAGGTTGAGGCATACTGCATGCCGCAATATCAAGCTCTGAATCATCATCAGTATTACAATGATGGAGGCCATGGTATTGGAAGCAGATTCTCTAATCAAAGTTCTTCTGAAATTTACTGCACATTGGAGTCATCATCTGCAACCGGCAGTTTTAATGTTTACAATTCTCCTTCAACTGTTAGTTTCTCACCAAATGGTAGCCCGGTTTCTCTTCAAGATTCTCAATCTCAGTCATATCCACCTGACAATAACTATGGATCTCCTATGAGTGGTTCGTGCATAACTGACGATTTAAGTACCTTCAAGCACAAGCTGAGAGAGTTGGAGAGTGTGATGTTTGGTCCTGATTGTGATAATCTTGATAGTTATGACAGTTCATTCAAGGATGCAACTGATTTCATGTCATCCGAGATGGACAGCTGGAGACAAACAATGGTGGCAATTTCTTGCAAGAACTTAAAGCATGTACTCGTCGTGTGTGCGAAAGCAATTGCAGAGAATGATCTGCTAATGGCACAAAGGTTGATGGATGAACTGAGGCAGATGGTGTCTGTATCTGGCGAACCGATTCAAAGGTTGGGAGCATACATGTTGGAAGGCCTAGTTGCACGGCTGTCTTCCTCCGGGAGTTCAATCTACAGAGCCTTGAGATGCAAGGAACCAGAAAGTGCTGAGCTCCTCTCCTATATGCACATACTCTATGAGGTTTGCCCCTACTTCAAATTCGGATACATGTCTGCGAATGGAGCAATCGCAGAAGCTATGAAGGATGAAGACAGAGTTCACATAATTGATTTTCAAATTTCTCAAGGGAGCCAGTGGATCACTTTGATTCAAGCTTTTGCAGCTAGGCCTGGAGGACCACCACACATCCGAATTACAGGTATTGATGATTCAACATCGGCTTATGCGCGCGGTGGTGGGCTGCACATTGTGGGAAAGAGGTTGTCCAAGCTTGCAGAGCATTTTAAAGTGCCATTTGAATTTCATGCTGCAGCTATATCTGGTTGTGATGTTCAGCTGCATAATCTTGGTGTTCGACCGGGCGAGGCATTAGCTGTGAATTTTGCATTCATGCTACATCACATGCCAGATGAAAGTGTCAGCACCCTGAATCATAGGGATAGGCTCTTGAGGCTGGTCAAGAGCCTATCCCCGAAAGTGGTGACATTGGTGGAGCAGGAATCCAACACCAACACAGCTGCATTCTTTCCACGTTTCCTCGAAACTATGGACTACTACACAGCCATGTTCGAGTCGATAGACGTGACTCTTCCGAGGGAACATAAAGAGAGGATCAATGTGGAGCAGCATTGCTTGGCAAGGGATTTGGTTAACATCATAGCATGTGAAGGGGTTGAGAGAGTGGAAAGACATGAAGTGCTTGGGAAATGGAGGTCAAGGTTTGCAATGGCTGGTTTCAGTCCTTACCCTTTGAGTTCATTGGTGAATGGTACCATCAAGAAACTGCTTGATAACTACAGTGATAGATATAGGCTTGAAGAGAGAGATGGAGCATTGTATCTTGGTTGGATGAATAGAGATTTGGTTGCCTCTTGTGCATGGAAATGA 1626 0.4446 MQASEHHRSSSMYYQPMQQVEAYCMPQYQALNHHQYYNDGGHGIGSRFSNQSSSEIYCTLESSSATGSFNVYNSPSTVSFSPNGSPVSLQDSQSQSYPPDNNYGSPMSGSCITDDLSTFKHKLRELESVMFGPDCDNLDSYDSSFKDATDFMSSEMDSWRQTMVAISCKNLKHVLVVCAKAIAENDLLMAQRLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSSSGSSIYRALRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAYARGGGLHIVGKRLSKLAEHFKVPFEFHAAAISGCDVQLHNLGVRPGEALAVNFAFMLHHMPDESVSTLNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYTAMFESIDVTLPREHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFSPYPLSSLVNGTIKKLLDNYSDRYRLEERDGALYLGWMNRDLVASCAWK 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00088 541 Pfam GRAS domain family 171 541 IPR005202 -
Aip07g00088 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 541 IPR005202 -
Aip07g00088 541 PANTHER SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 15 541 - -
Aip07g00088 541 Coils Coil 180 200 - -
Aip07g00088 541 MobiDBLite consensus disorder prediction 82 104 - -
Aip07g00088 541 ProSiteProfiles GRAS family profile. 162 541 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00088 Aip-Chr7 693564 695189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00088 12 541 GRAS Transcription Factor Family AT5G48150 66.791 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip07g00088 GRAS 2.8e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00088 - - gmx:100808300 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00088 07 693564 695189 Aip07g00088 07 693564 695189 ECH