Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00087 ATGGTTTCCTCAGAAGAAACTGCAGATCACAATGTTCCTTATGCTATACCACTGCAGAGAGCAAGTCCTCATAGTGATATTACAGAATCACAAGGGATTCATGGAGCTGAAACCTCTTCGTCCAAGCAAAAGGAAGAAACAAGTATTCCTTCTGCTGTGGCTCAAAACAAAGTGAAGGATTCTGATGTTACTGCTTCTGCATTGCAATCAGATCGACAACGAAGCACACACATTGCAGCATCAGTTGAAAAACTTGTGCAGAGCCCTGATACACCTTTCCGTGAAAAACGTCATCCATCACAATCTGGTCATGACAGTCCCTCAATAATACGTGAAAGGGTATCAAAAGATGGGTATAACTGGCGAAAATATGGCCAGAAAAATGTTAAAGGGAATGAATTTATAAGGAGCTATTACAAGTGTACGCATCCGAACTGCCAGGCAAAGAAACAGCTAGAGCAGTCAAACGATGGCCAGATCACAGATTCCATTTGCATTGGTCAGCATAATCATCCTAGGCCTCAATCCAACATCACAAAGCCTGTTGGTCCTGTTCTTCCTGTTCTTGAAGAAGGACTAGACAAGCCCCGTGTTGCCAATGTAGAAGTTGAAGACAAATCATTGAATGAGCATGCAAGTGTACCTCAACAGATGAAGTTTTCACACTCGCTTCAGATTACAAATGTTCCTGCAGCTGATCTGATGAAAGCTGCACATTCACAACTGACCACAGCAAATGACGAGGTTCACAACAATGACTATCCTGACTCAAAACGGCAGAGGATAGACGATAGTAATATTGAAGTCAGTGTAGCTGACAAGTCAACTTGTGCGTCTCGTGTTGTCGTTCAAACTTCAAGTGAGGTTGATTTTGTAAATGATGGGTACCGTTGGCGCAAATATGGTCAGAAACTAGTTAAAGGAAATGCAAATCCCAGAAGTTATTATCGATGCTCTAGTCCCGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAGTTGTAATAACTACCTATGAGGGACAACATGATCATGAAATCCCGCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATGCTCAAACAACAACCATTAATGGCAAGCCAGGAACCAATTCTGTATCAAATCCTGTTTCTACAGATACAAGAGGAAGCAGATCAAATGAGAAAGTAAATGGCAACTCAATTACTAAATCAGAGGCTGGTAAGAGTCCTGAAAGTAAATTAAATGGGCAACAACAACAAAAAAATGAAAATGCAGTTGCCAAACAGGATTATGTTGGTGCTAACATCACATGCCAATCAAATTCTGAAGATCCATGTCGATCAAAATCAAACGAACAGCCGAAAGATGACGTAGAAACTAAATCAGAAGGAAAGAACGGATCCCCTAATGTGGTTGTTGTTCATGATACTCCTGGTCAAGAAGGTCAACTCAAGAAGCAATCAGCATCTGATGCAGAAGCTGTCTAG 1488 0.416 MVSSEETADHNVPYAIPLQRASPHSDITESQGIHGAETSSSKQKEETSIPSAVAQNKVKDSDVTASALQSDRQRSTHIAASVEKLVQSPDTPFREKRHPSQSGHDSPSIIRERVSKDGYNWRKYGQKNVKGNEFIRSYYKCTHPNCQAKKQLEQSNDGQITDSICIGQHNHPRPQSNITKPVGPVLPVLEEGLDKPRVANVEVEDKSLNEHASVPQQMKFSHSLQITNVPAADLMKAAHSQLTTANDEVHNNDYPDSKRQRIDDSNIEVSVADKSTCASRVVVQTSSEVDFVNDGYRWRKYGQKLVKGNANPRSYYRCSSPGCPVKKHVERASHDSKVVITTYEGQHDHEIPPGRTVTHNAATNAQTTTINGKPGTNSVSNPVSTDTRGSRSNEKVNGNSITKSEAGKSPESKLNGQQQQKNENAVAKQDYVGANITCQSNSEDPCRSKSNEQPKDDVETKSEGKNGSPNVVVVHDTPGQEGQLKKQSASDAEAV 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00087 495 SMART WRKY_cls 115 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 SMART WRKY_cls 292 351 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 MobiDBLite consensus disorder prediction 448 463 - -
Aip07g00087 495 Gene3D WRKY domain 279 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 ProSiteProfiles WRKY domain profile. 110 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 2 462 IPR044810 GO:0003700
Aip07g00087 495 MobiDBLite consensus disorder prediction 1 111 - -
Aip07g00087 495 Gene3D WRKY domain 107 175 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 SUPERFAMILY WRKY DNA-binding domain 111 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 ProSiteProfiles WRKY domain profile. 287 352 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 MobiDBLite consensus disorder prediction 367 495 - -
Aip07g00087 495 MobiDBLite consensus disorder prediction 367 426 - -
Aip07g00087 495 PANTHER WRKY TRANSCRIPTION FACTOR 1 2 462 - -
Aip07g00087 495 Pfam WRKY DNA -binding domain 116 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 Pfam WRKY DNA -binding domain 293 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 MobiDBLite consensus disorder prediction 433 447 - -
Aip07g00087 495 SUPERFAMILY WRKY DNA-binding domain 284 352 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip07g00087 495 MobiDBLite consensus disorder prediction 23 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00087 Aip-Chr7 688838 692720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00087 101 366 WRKY Transcription Factor Family AT2G04880 50.735 8.94e-87 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip07g00087 WRKY 3.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00087 K18834 - gmx:100781219 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00087 07 688838 692720 Aip07g00087 07 688838 692720 ECH