Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00084 ATGTTAGGGATGCTTGATTGTGGGCTTTTGCCTGATATTAGTACAATCCTCAATTTGCTTTCAGCATGTGTGCAACCCAAAGCACTATTTCAAGGTTGTGGTCAAACAGGATCTCTTGAACTTGGAAAATGGATTGATAATTACTCTATTAACAAAGGGTTGAAAGAAAATATTGTAGTTTGTAATGCACTAATTGACATGTATGCAAAGTGTGGAAGTCTAAACAATGCTAAGGAGCTTTTCTATTCTATGGCTAACAAAACTATCGTCACCTGGACAACCCTGATTACTGCTTGTGCTTTGAATGGAGATGTTAAGGATGCTTTGGACCTGTTTCTTGTGATGGTGCAGATGGGAATGAAACCAAACCACATAACATTTCTTGCTGTTCTCCAAGCTTGTGCTCATGGAGGTTTACTTGAAAGAGGATTGGAGTGCTTCAACATGATGACACAAAAGTATGGTATAAGACCCGGTATAGACCATTATTCATGTATGGTTGATCTCCTTGGTCGTAAAGGACAACTGAGAGAAGCTTTAGGAATTATTGAATGTATGCCGGTTGAACCTGATGCTGGCATATGGAGTGCATTGCTGTCTGCATGCAAACTACATGCTAAGATGGAGATGGGCAAATACGTCTCAGAGCGGCTATTTCAATTGGAGCCCAATGTGGCAGTTCCTTACGTGGAGTTGGCTAACATATATGCATCAGCTGGGATGTGGGATGGAGTTGCAGCTATAAGAAGAAAGATGAAATATCTTCAAGTGAGAAAATGTCCTGGACAAAGCATTATCCAAGTGAGTGGCAAAACTCATATCTTTACAGTTGAAGATAGACATCACCCTGAAACCTTGTATATATATGACATGCTAGATGGCTTGACTTCTCATTCTAGACAAGCCCAACTAACAAATTCATGTCTTAAAATAAGTAGTTTCAAAAAAACTCTTAATTTAGCAACCATTCTCCTTTCCCTAGCTGCAAACTTTTGGCTATTGAAAATGCCTGCTAGTGCTGGGAACTCAAACACCTATGATAGAGAAGGGGAACCGTTTGTTGAAGTTGATCCAACTGGCCGGTTCGGCCGTTACGAAGATCTGCTTGGTTATGGCGCCGTGAAGAAGGTTTATAGGGCCTTTGATCAAGAAGAAGGCATTGAGGTTGCTTGGAATCAAGTTCGACTGCGGAATTTCAGTGACGATCTTGTTTTGATAAACAGGCTTCACTCTGAGGTTGAGTTGCTTAGAAACTTGAGCAACAAGTATATCATTGTTTGTTATAGTGTTTGGAAAGACAATGATCGCCAGAACATCAATTTCATCACTGAGGTTTGCACTTCTGGCAATTTGAGGGAATACCGGAAGAAGCACCGCCATGTTTCCATTAAGGCGTTGAAGAAGTGGTCGAAACAAGTCCTTGAAGGGCTGGAGTATCTTCATACTCATGATCCCTGCATTATACACAGAGATCTCAATTGTAGCAACATCTTTGTCAATGGGAACATTGGACAGGTGAAAATTGGTGATCTAGGATTGGCGGCGATAGTGGGGCGGAGCCATGCAGCGCATTCAATTTTAGGGACACCAGAGTATATGGCACCGGAGCTGTATGAGGAAGATTACACTGAGATGGTGGACATATACTCTTTTGGGCTGTGTGTACTTGAGATGGTTACAATGGAGATACCCTATTGTGAATGTGACAGTGTAGCCAAGATTTACAAAAAGGTTACAATGGGAATTAAGCCTCAATCCTTGAACAAAGTCACAGACCCAGAGATGAAGGCATTCATTGAAAAGTGCATAGCACAGCCAAGGGCAAGGCCTTCAGCCACTGATCTCCTTAAGGACCCTTTCTTTTCTGAACTCAACAATGATGAAGAATAA 1890 0.4153 MLGMLDCGLLPDISTILNLLSACVQPKALFQGCGQTGSLELGKWIDNYSINKGLKENIVVCNALIDMYAKCGSLNNAKELFYSMANKTIVTWTTLITACALNGDVKDALDLFLVMVQMGMKPNHITFLAVLQACAHGGLLERGLECFNMMTQKYGIRPGIDHYSCMVDLLGRKGQLREALGIIECMPVEPDAGIWSALLSACKLHAKMEMGKYVSERLFQLEPNVAVPYVELANIYASAGMWDGVAAIRRKMKYLQVRKCPGQSIIQVSGKTHIFTVEDRHHPETLYIYDMLDGLTSHSRQAQLTNSCLKISSFKKTLNLATILLSLAANFWLLKMPASAGNSNTYDREGEPFVEVDPTGRFGRYEDLLGYGAVKKVYRAFDQEEGIEVAWNQVRLRNFSDDLVLINRLHSEVELLRNLSNKYIIVCYSVWKDNDRQNINFITEVCTSGNLREYRKKHRHVSIKALKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRSHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGLCVLEMVTMEIPYCECDSVAKIYKKVTMGIKPQSLNKVTDPEMKAFIEKCIAQPRARPSATDLLKDPFFSELNNDEE 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00084 629 TIGRFAM PPR: pentatricopeptide repeat domain 90 123 IPR002885 -
Aip07g00084 629 TIGRFAM PPR: pentatricopeptide repeat domain 125 159 IPR002885 -
Aip07g00084 629 TIGRFAM PPR: pentatricopeptide repeat domain 59 84 IPR002885 -
Aip07g00084 629 Gene3D Phosphorylase Kinase; domain 1 347 444 - -
Aip07g00084 629 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 341 625 - -
Aip07g00084 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 57 87 IPR002885 -
Aip07g00084 629 Gene3D Transferase(Phosphotransferase) domain 1 446 626 - -
Aip07g00084 629 Pfam Protein kinase domain 367 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip07g00084 629 Pfam PPR repeat 59 86 IPR002885 -
Aip07g00084 629 Pfam PPR repeat 162 187 IPR002885 -
Aip07g00084 629 SUPERFAMILY Protein kinase-like (PK-like) 356 621 IPR011009 -
Aip07g00084 629 Gene3D Tetratricopeptide repeat domain 25 139 IPR011990 GO:0005515
Aip07g00084 629 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 341 625 - -
Aip07g00084 629 Pfam E motif 205 267 IPR046848 -
Aip07g00084 629 CDD STKc_WNK 361 621 - -
Aip07g00084 629 Pfam PPR repeat family 88 135 IPR002885 -
Aip07g00084 629 Gene3D Tetratricopeptide repeat domain 140 278 IPR011990 GO:0005515
Aip07g00084 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Aip07g00084 629 ProSiteProfiles Protein kinase domain profile. 363 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00084 Aip-Chr7 677018 681603 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00084 333 621 MAP Kinase Kinase Kinase AT5G55560 75.433 5.67e-166 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Aip07g00084 Pkinase 3.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00084 K08867 - adu:107496236 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip07g00084 07 677018 681603 Aip07g00084 07 677018 681603 ECH