Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00078 ATGATTTCAGCTATTTCGTGGATACCGATAGGTGCTTCGAAGGCGGAACCCACCGTAGTTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCGCCGCCGCCGCCGCAAGTGATGAACGCATGGATGATGCCGGTGGTGCCGTCGATGAAGTTGCGCGAGCACTCAATGTTGCTGATGCTCTCGGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCTGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCCGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTTCCTGGAACAAAGCGTGCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACACGGACAAGGCAAGTACAGTTGCTTGGCATCATCATGAACAAGAAATTCTTCTTAGTGGTTCGTTTGATCATACTGTGGTCCTGAGGGATGTAAGGATGTCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACTATTTTGTGGTGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACAGCAAAGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGCGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAATAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTCTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAACAAGAATAGAACTCGGTCGTGA 1425 0.4435 MISAISWIPIGASKAEPTVVEPPSKEEIQDIITAAAAASDERMDDAGGAVDEVARALNVADALGKADKLDDIALGLKELDMEHYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLSWNKACRNVLASASADKRVKIWDVATGKCESTMEHHTDKASTVAWHHHEQEILLSGSFDHTVVLRDVRMSSHPGYKWSVTADVESLAWDPHTNHYFVVSLEDGTVKCFDVRTAKSESTSDLSSTFTLHAHDKAVTSVSYNASAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYNKNRTRS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00078 474 Pfam WD domain, G-beta repeat 240 271 IPR001680 GO:0005515
Aip07g00078 474 Pfam WD domain, G-beta repeat 372 408 IPR001680 GO:0005515
Aip07g00078 474 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 466 - -
Aip07g00078 474 SUPERFAMILY WD40 repeat-like 189 459 IPR036322 GO:0005515
Aip07g00078 474 SMART WD40_4 229 271 IPR001680 GO:0005515
Aip07g00078 474 SMART WD40_4 318 357 IPR001680 GO:0005515
Aip07g00078 474 SMART WD40_4 368 408 IPR001680 GO:0005515
Aip07g00078 474 SMART WD40_4 274 314 IPR001680 GO:0005515
Aip07g00078 474 SMART WD40_4 167 206 IPR001680 GO:0005515
Aip07g00078 474 SMART WD40_4 413 453 IPR001680 GO:0005515
Aip07g00078 474 Gene3D - 77 321 IPR015943 GO:0005515
Aip07g00078 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 375 413 - -
Aip07g00078 474 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 466 IPR044285 GO:0006364
Aip07g00078 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 238 280 IPR001680 GO:0005515
Aip07g00078 474 ProSitePatterns Trp-Asp (WD) repeats signature. 258 272 IPR019775 -
Aip07g00078 474 Gene3D - 322 470 IPR015943 GO:0005515
Aip07g00078 474 PRINTS G protein beta WD-40 repeat signature 258 272 IPR020472 -
Aip07g00078 474 PRINTS G protein beta WD-40 repeat signature 440 454 IPR020472 -
Aip07g00078 474 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Aip07g00078 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 420 462 IPR001680 GO:0005515
Aip07g00078 474 ProSiteProfiles Trp-Asp (WD) repeats profile. 375 417 IPR001680 GO:0005515
Aip07g00078 474 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 238 276 - -
Aip07g00078 474 ProSitePatterns Trp-Asp (WD) repeats signature. 395 409 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00078 Aip-Chr7 640813 644200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00078 255 453 U-box Gene Family AT2G33340 30.806 7.06e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00078 K14791 - gmx:100807947 684.485