Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00038 ATGGAGAACGAGATGCAACAGCTGCTTAGCATGGGCTTCCCCAACGAGCTAGCCGCCCAAGCCTTGGCTGCCACCGGCGGCAGATCCACCGTCAAAGCCACCGAATGGATCCTAACTCACAAATCGAACTCTTCATCTTCCCCACCGCCGGCGCCCACGCAACCCAAGATCGAACGGTTTTTCCACTCGCACTCGAAGCAAGAAGGGCAAGCAATTGATGTTGAGCAACAGCAACACGACGAGGCATCCCCACTCTCAAAACGCCAAAGAACACTACCCTCCTCAAATCCCAATCCCAATCCTAATCCTAATCCTAATCCTCAATCTTCCTTCTTCTTCAACCCTCTTCGCTCTTCCAAGAAGAACGCCCACGAGCCTTTATACGAGCGCCTCCGCCCCAGAACCCTCGACGACGTCCTTGGTCAGGACCATCTCCTCTCCCCCACTTCCCTCCTTCGCTCCGCCATCCACCGGAACCGTCTCCCTTCCATCCTCCTCTGGGGTCCCCCCGGCACCGGCAAGACCACAATCGCCAGAGCCATCGTCAACTCCTTTCCCCATCACCAATGCCCTTGTTATCGCTTTGTCTCCTTATCCGCTGTCACCAGCGGCGTCAAAGATGTCCGGGACGCCGTGGACGAGGCCAGAAAGCTGAGAGTGAAGAGCAACCAGAGAACCGTTCTGTTCGTGGATGAGGTTCACAGATTTAACAAGTCCCAGCAGGACTCTTTCTTGCCCGTCATTGAAGATGGCAGCATTGTCTTCGTCGGAGCCACCACCGAGAACCCTTCGTTCCACTTGATCACCCCTCTCTTGTCTCGCTGCAGGGTCCTTACCCTTAACCCCCTCAAGCCCCACCATGTTGCCTTGCTTCTCAGAAGGGCTGTCAATGACTCCGACAAAGGGTTGACTCACAGCGCTGGTTGTCAGGTTGATGTGAGCCAGGATGTTCTGGATTTCATAGGAAACAACTGTGATGGGGATGCTCGTGTCGCCCTGAATGCTCTCGAGATAGCTGCTGTTACTGCTGCTGCAAGGCTCCAACAACCTGCTAACCAATCCACAGAGGAGCAACACAAGGCTGCTGCTGTTGCTGTTACACTCGATGACGCAAAGGAGGCACTTCAGTGCAAGCATCTTGCTTATGATAAAGCTGGGGAAGAGCACTATAATCTGATCAGCGCGCTCCACAAATCCATGAGGGGGAGTGATGCCAATGCAGGGATTTATTGGTTGGCAAGAATGTTGGAAGGAGGGGAAGAGCCTCTCTACATTGCACGCAGGCTCATAAGGTTTGCAAGTGAGGATGTTGGTTTGGCTGATCCCTCAGCTCTCAATCAGGCTGTTTCTTGCTATCAGGCCTGCCACTTCCTGGGAATGCCAGAATGCAATGTCATTCTTGCGCAGTGTGTCGCCTACTTGGCATTGGCTCCTAAATCTGTCTCTGTTTACAGAGCAATAGGTGCTGCTCAGAAGGTGGTGAGGGAATCTATTGGGCAGAATGAAGGGGTGCCCCTTCATCTCAGGAATGCTCCAACCAAACTAATGAAGGACATTGGATATGGCAAGGGATACATATACCCTCCAGACAACCCTTCAGCAACACAGAGCTATTTGCCACCCTCACTCGCAGGCTACAAGTTCCTTGATTGGCCTACCAGGACTGCTTCTCATGATGAAGCAAATCCATCCACATCTGGGTCTGGCAGTATATAG 1716 0.5297 MENEMQQLLSMGFPNELAAQALAATGGRSTVKATEWILTHKSNSSSSPPPAPTQPKIERFFHSHSKQEGQAIDVEQQQHDEASPLSKRQRTLPSSNPNPNPNPNPNPQSSFFFNPLRSSKKNAHEPLYERLRPRTLDDVLGQDHLLSPTSLLRSAIHRNRLPSILLWGPPGTGKTTIARAIVNSFPHHQCPCYRFVSLSAVTSGVKDVRDAVDEARKLRVKSNQRTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLKPHHVALLLRRAVNDSDKGLTHSAGCQVDVSQDVLDFIGNNCDGDARVALNALEIAAVTAAARLQQPANQSTEEQHKAAAVAVTLDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAGIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVSVYRAIGAAQKVVRESIGQNEGVPLHLRNAPTKLMKDIGYGKGYIYPPDNPSATQSYLPPSLAGYKFLDWPTRTASHDEANPSTSGSGSI 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00038 571 Pfam UBA/TS-N domain 5 37 IPR015940 -
Aip07g00038 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 352 IPR027417 -
Aip07g00038 571 Pfam AAA C-terminal domain 310 401 IPR032423 -
Aip07g00038 571 Gene3D - 480 561 - -
Aip07g00038 571 SMART AAA_5 160 283 IPR003593 -
Aip07g00038 571 CDD HLD_clamp_RarA 283 376 - -
Aip07g00038 571 Gene3D - 376 479 - -
Aip07g00038 571 SUPERFAMILY UBA-like 3 50 IPR009060 GO:0005515
Aip07g00038 571 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 40 IPR015940 -
Aip07g00038 571 SUPERFAMILY post-AAA+ oligomerization domain-like 386 553 IPR008921 GO:0003677|GO:0006260
Aip07g00038 571 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 17 558 - -
Aip07g00038 571 Pfam ATPase family associated with various cellular activities (AAA) 164 277 IPR003959 GO:0005524|GO:0016887
Aip07g00038 571 MobiDBLite consensus disorder prediction 76 116 - -
Aip07g00038 571 CDD AAA 141 276 - -
Aip07g00038 571 Gene3D - 283 358 - -
Aip07g00038 571 Gene3D - 116 281 IPR027417 -
Aip07g00038 571 Gene3D - 1 53 - -
Aip07g00038 571 Pfam MgsA AAA+ ATPase C terminal 402 550 IPR021886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00038 Aip-Chr7 347011 348863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00038 126 357 Core DNA Replication Machinery Family AT1G77470 26.050 3.77e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00038 K07478 - gmx:100799257 810.061