Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00031 ATGCCTCAGTCCCTCGTCGACTATCCCAGCTGCACAAGCACAACCAATCCGGGACCAACTGGAGAGGCAGCGCATGGGGTGTGTAAAGTGAAGAAGAAGCAAAGAAAGAAATGTGGAGAGAGCTGGGAGAAGTGGAAGGATCATATTCATAAAGCTCGTAAGTCGCAAGTTGAAGTTGGCGGAGTTACAGGTTTGCAGCCTGAGCTTCAAACTGCTGCTGCTGATTCCTTCTCAGATCATCCTCTTCATCGCCTCCAGACATGTGCTGCAAATGCAAATGAAAAAGGTGACAAGGCTTCCTTGATTCCTCACTCCAGACGGCCTGCACTCCCCTCTCTGCAAATACCCCCATGGTCACTAGATGCCGCATTATCTTCTTTCGCAAAGACGGATGGTCCTTCCCTCTCCAGTCCCATTTCTGCTTCCACATCCACCTCTTCTAGAGGACTTCCGCCAAGGCCAAATTCGGCCAGAGTCAGGCCTTCCATGAGAAGTATAATTCCTCAAGGGAACTTCAGGGCCAGAACCAGTCCCCGCGATGCTGAAAGGACGGTTCTCATTGTTCCTGATACTACCCTGTCAAATGCACTTTTGGATAAGCCTTCTACTTCAAGGACCCTCTCTCTTAATGGTAAAGGTTCATTCTCTCCATTGTCAAAGGTTGCCCACTCATTACCGGTTACTCCAATTGCATCTTTGGGTCAAGAAAGTGTACATGGCAGACATCTGGGATGTGCTTCTGATTTAAATACAATGGTTGTCAAGCAGCATATAACTCGATCACTTTCGGTTCCAGTTGATGCCAAAGCCACCAAATTGAGGTGCACTCAGTCTAGGGTCTTGATTCGTATCATTTCAGCCAGGCGGCATCTTGCAACTGTTGATGGAACTTCAACTGGTGATGCTTCAGTCATGGAGATTGCTATTGAGGATGCTACAGCAGATATTCCAGAGGAAGAAGCAGTTTGTAGGATTTGTTTGGCAGAGCTCGGGGAAGGAGAAAATACGCTTAAGATGGAATGCAGTTGTAAAGGTGATCTTGCGCTTGCTCATCAAGACTGTGCAGTAAAGTGGTTTAGTATTAAGGGCAACAGGACCTGTGATGTCTGCAAGCAGGATGTTCAAAACCTCCCGGTAACACTATTGAAAATTTATGATCGTCAACCCCCTGCCAGACAGCCACCAAATGTGCCACAACCAAGGGAAATAGCTTATTACAGGATCTGGAATGATATACCTGTACTTGTCTTGATTAGCATGCTTGCTTACTTCTGCTTTTTGGAGCAACTACTGGTTTCAGATTTGGGTCCTCGAGCTCTCGCAATTGCATTACCTTTCTCCTGTGTTTTGGGTCTCCTAACATCTATGATTGCGTCAACCATGGTGAGCAGGAGTTACGTATGGGCTTATGCTTGCTTCCAGTTCGCAATTCTCATCTTGTTTGCTCACGTATTTTTTAATATGCTTAATGTCAATCCAATTCTGTCGATCCTCCTTTCCTCATTCATTGGATTCGGGATGACAATAAGCATGAATTGTCTCCTTTCGGAATATGTTAGATGGAGAGCAAATAGGCAGAATCAAACACCCAATGAGAATGGTAACAGTCTAGAGCAGCAGCATCAAGAACAAATAGAGCAACAAGAGCAACATCGATGA 1659 0.4581 MPQSLVDYPSCTSTTNPGPTGEAAHGVCKVKKKQRKKCGESWEKWKDHIHKARKSQVEVGGVTGLQPELQTAAADSFSDHPLHRLQTCAANANEKGDKASLIPHSRRPALPSLQIPPWSLDAALSSFAKTDGPSLSSPISASTSTSSRGLPPRPNSARVRPSMRSIIPQGNFRARTSPRDAERTVLIVPDTTLSNALLDKPSTSRTLSLNGKGSFSPLSKVAHSLPVTPIASLGQESVHGRHLGCASDLNTMVVKQHITRSLSVPVDAKATKLRCTQSRVLIRIISARRHLATVDGTSTGDASVMEIAIEDATADIPEEEAVCRICLAELGEGENTLKMECSCKGDLALAHQDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYDRQPPARQPPNVPQPREIAYYRIWNDIPVLVLISMLAYFCFLEQLLVSDLGPRALAIALPFSCVLGLLTSMIASTMVSRSYVWAYACFQFAILILFAHVFFNMLNVNPILSILLSSFIGFGMTISMNCLLSEYVRWRANRQNQTPNENGNSLEQQHQEQIEQQEQHR 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00031 552 Pfam RING-variant domain 323 370 IPR011016 GO:0008270
Aip07g00031 552 MobiDBLite consensus disorder prediction 1 25 - -
Aip07g00031 552 MobiDBLite consensus disorder prediction 1 20 - -
Aip07g00031 552 MobiDBLite consensus disorder prediction 529 552 - -
Aip07g00031 552 SMART ringv_2 322 371 IPR011016 GO:0008270
Aip07g00031 552 PANTHER OS02G0165000 PROTEIN 84 549 - -
Aip07g00031 552 MobiDBLite consensus disorder prediction 131 164 - -
Aip07g00031 552 PANTHER OS02G0165000 PROTEIN 84 549 - -
Aip07g00031 552 ProSiteProfiles Zinc finger RING-CH-type profile. 315 377 IPR011016 GO:0008270
Aip07g00031 552 MobiDBLite consensus disorder prediction 131 152 - -
Aip07g00031 552 MobiDBLite consensus disorder prediction 529 543 - -
Aip07g00031 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 378 IPR013083 -
Aip07g00031 552 SUPERFAMILY RING/U-box 319 374 - -
Aip07g00031 552 CDD RING_CH-C4HC3_MARCH 323 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00031 Aip-Chr7 312232 318134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00031 306 377 C3H Transcription Factor Family AT2G37950 46.575 1.02e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00031 - - ahf:112765571 999.193