Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00009 ATGGCTAAAGGTCAATCCTCTTCTTCTGATCAGAAAAGTGAAAAGAAGGATTATTCAACTGCGATATTAGAACGAAAGAAGTCTCCGAATCGGCTTGTTGTGGATGAATCAATCAATGATGATAATTCTGTTGTTACTTTGCATCCTGATACCATGGAAAAGCTCAATTTTTTCCGAGGGGATACTGTTCTGGTTAAGGGGAAGAAGAGAAAGGACACTGTTTGCATTGTTCTTGCTGATGATCAGTGCGAAGAGCCAAGAATTCGGATGAACAAAGTTGTAAGATCTAATCTTAGGGTTAGGCTTGGAGATGTTGTCTCTGTTCATCAATGTTCTGATGTGAAGTATGGGAAGCGAGTTCACATCCTTCCCATTGATGATACTATTGAGGGTGTCACCGGCAACTTGTTTGATGCATATCTAAAGCCATATTTTATGGAGTCGTACCGACCTGTGAGGAAAGGGGACTTGTTTCTTGTTAGAGGCGGAATGCGAAGTGTTGAATTCAAGGTGATAGAAACTGATCCTGGTGAATATTGTGTCGTGGCACCGGATACTGAAATCTTCTGCGAGGGAGAGCCGATTAAACGCGAGGATGAAGAGAGACTAAATGAAGTTGGCTATGATGATGTTGGGGGTGTTAGGAAGCAAATGGCTCAAATTCGTGAGCTCGTAGAACTTCCACTCAGGCATCCGCAACTCTTCAAATCGATCGGTGTTAAGCCCCCGAAAGGAATCTTGCTTTATGGACCGCCAGGTTCCGGGAAGACTCTGATTGCAAAAGCAGTTGCTAATGAGACAGGTGCGTTCTTCTTTTTGATCAATGGACCGGAAATCATGTCGAAGCTGGCTGGTGAAAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCCGAAAAGAATTCCCCTTCTATCATTTTTATTGATGAATTGGATTCAATTGCTCCAAAAAGAGAAAAGACACATGGTGAGGTAGAGAGGCGTATAGTATCGCAACTTTTGACTCTAATGGATGGCCTCAAGACCCGTTCGCATGTTATTGTGATCGGAGCAACAAATAGGCCCAACAGTATTGATCCTGCTTTGAGAAGGTTTGGAAGGTTTGATCGCGAAATTGATATCGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACTAAGAACATGAAGCTTTCTGATAATGTTGATCTTGAAAGAGTTGCAAGGGACACTCATGGTTATGTAGGAGCAGATCTTGCTGCTCTATGCACAGAGGCTGCGCTGCAGTGTATAAGAGAGAAGATGGATGTGATTGACTTGGAAGATGAATCAATAGATGCTGAGGTTCTGAATTCCATGGCTGTCACCAATGAGCACTTCCAAACTGCTTTGACTTCTTCAAACCCGTCTGCGTTGCGTGAAACAGTTGTGGAGGTTCCAAATGTTTCCTGGGATGACATTGGAGGTCTAGAGAATGTTAAAAGGGAGCTTCAAGAGACCGTTCAATACCCGGTGGAACATCCTGAGAAGTTTGAGAAATTTGGCATGTCGCCTTCCAAAGGTGTTCTTTTCTATGGCCCTCCGGGCTGCGGCAAAACCCTGCTTGCAAAAGCTATTGCAAATGAATGCCAGGCCAACTTCATAAGTGTCAAGGGACCTGAGTTGCTTACTATGTGGTTCGGTGAAAGTGAGGCAAACGTTCGCGAGATATTCGACAAGGCCCGGCAGTCTGCACCATGTGTGCTTTTCTTTGATGAACTCGACTCTATTGCAACCCAGCGAGGAAGTTCAAGAGGGGATTCCGGCGGTGCTGATAGAGTGTTGAACCAACTACTAACAGAGATGGATGGAATGTCTGTTAAGAAAACAGTGTTCATCATTGGAGCAACAAACAGACCTGACATTATAGACCCTGCATTGCTTCGGCCAGGACGTCTTGACCAATTGATATACATTCCTTTACCGGATGAGAGTTCACGTCTCCAGATCTTCAAGGCGTGCTTGAGGAAGTCACCAATCTCGAAGGACGTCGATCTTTCGGCTCTTGCTCGTTATACACATGGATTTAGTGGTGCAGACATTACTGAGATTTGTCAAAGAGCTTGCAAGTATGCCATTAGAGAAGATATTGAGAAGGACATTGAGATGGAGAAAAGAAAAATAGAGAACCCTGAAGCCATGGAAGAAGATAATGAAGACACTGATGTAGTGGCTGAGATAAAACCATCACACTTTGAGGAGTCCATGAAGTTTGCTCGGAGGAGTGTCAGCGACGCCGACATCAGAAAATACCAACTGTTTGCTCAGACATTGCAACAGTCTCGCGGGTTCGGATCAGAGTTCCGGTTCACAGATAGGACTACTGATACCACTTCTGCTGCTGGTGCCTCTGACCCTTTCTCATCTGCTACAGCTGAAGGAGATGATGATCTATATGGTTAA 2433 0.4439 MAKGQSSSSDQKSEKKDYSTAILERKKSPNRLVVDESINDDNSVVTLHPDTMEKLNFFRGDTVLVKGKKRKDTVCIVLADDQCEEPRIRMNKVVRSNLRVRLGDVVSVHQCSDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIAKAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEVLNSMAVTNEHFQTALTSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSRGDSGGADRVLNQLLTEMDGMSVKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLSALARYTHGFSGADITEICQRACKYAIREDIEKDIEMEKRKIENPEAMEEDNEDTDVVAEIKPSHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFTDRTTDTTSAAGASDPFSSATAEGDDDLYG 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00009 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 205 467 IPR027417 -
Aip07g00009 810 Gene3D - 469 651 IPR027417 -
Aip07g00009 810 MobiDBLite consensus disorder prediction 1 23 - -
Aip07g00009 810 Pfam ATPase family associated with various cellular activities (AAA) 246 375 IPR003959 GO:0005524|GO:0016887
Aip07g00009 810 Pfam ATPase family associated with various cellular activities (AAA) 519 651 IPR003959 GO:0005524|GO:0016887
Aip07g00009 810 CDD AAA 212 375 - -
Aip07g00009 810 Gene3D - 655 765 - -
Aip07g00009 810 SMART AAA_5 242 378 IPR003593 -
Aip07g00009 810 SMART AAA_5 515 653 IPR003593 -
Aip07g00009 810 PANTHER AAA-FAMILY ATPASE 6 783 - -
Aip07g00009 810 Gene3D - 8 113 - -
Aip07g00009 810 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 36 769 IPR005938 GO:0016787
Aip07g00009 810 SUPERFAMILY Cdc48 domain 2-like 113 205 IPR029067 -
Aip07g00009 810 Pfam AAA+ lid domain 673 714 IPR041569 -
Aip07g00009 810 Pfam AAA+ lid domain 398 440 IPR041569 -
Aip07g00009 810 ProSitePatterns AAA-protein family signature. 621 639 IPR003960 GO:0005524|GO:0016887
Aip07g00009 810 MobiDBLite consensus disorder prediction 9 23 - -
Aip07g00009 810 SUPERFAMILY ADC-like 27 111 IPR009010 -
Aip07g00009 810 Pfam Cell division protein 48 (CDC48), domain 2 133 196 IPR004201 -
Aip07g00009 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 766 IPR027417 -
Aip07g00009 810 SMART CDC48_N_2 31 114 IPR003338 -
Aip07g00009 810 MobiDBLite consensus disorder prediction 785 810 - -
Aip07g00009 810 Gene3D - 114 210 - -
Aip07g00009 810 CDD AAA 485 651 - -
Aip07g00009 810 ProSitePatterns AAA-protein family signature. 346 364 IPR003960 GO:0005524|GO:0016887
Aip07g00009 810 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 6 783 - -
Aip07g00009 810 Pfam Cell division protein 48 (CDC48), N-terminal domain 31 112 IPR003338 -
Aip07g00009 810 Gene3D - 377 468 - -
Aip07g00009 810 SMART CDC48_2_2 131 197 IPR004201 -
Aip07g00009 810 Gene3D - 211 375 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00009 Aip-Chr7 98793 103173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00009 448 779 Calmodulin-binding Proteins AT3G56690 42.771 1.25e-80 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00009 K13525 - gmx:100798680 1479.92