Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip07g00002 ATGGCGAGGCCTTCGAAGCCGCAAGTATCTTCCGACGAAGCTATCTCTAGCGGTTCGAGCTCCGAGGAGGAGGAGCAGGTCAACCAGCAGATCAATGAAGAGGACGAGGAGGAGCTTGAGGCGGTGGCTCGTCAAGCTAGCTCCGACGACGACGATGACGAAGCCGGAAATGATAATTCGCACGATGACGACGAAGATCCTGCTGCCGCCGGAGATGCTGACGAGGATGAGCAGGGTGAAGATGCTGTTGATCCTGGCAAGCGGGAGAAAGCTAGATTGAAAGAGATGCAGAAAATGAAGAAGCAGAAGATTCAGGAGATATTGGATGCACAAAATGCAGCCATAGATGCCGACATGAACAATAGAGGAAAAGGAAGACTGAAGTATCTCTTACAGCAGACTGAGCTGTTTGCACATTTTGCAAAAGGTGATCAATCTTCATCTCAGAAGGCAAGAGGAAGGGGCCGCCATGCATCAAAAGTGACAGAAGAGGAGGAAGATGAAGAATACCTAAAAGAAGAGGAAGATGGTTTATCAAACACTCGTCTTGTGACACAACCATCATGCATCCAAGGGAAATTGAGGGACTACCAACTTGCTGGGCTAAACTGGCTTATAAGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCTTTGTTGGGTTATTTACATGAGTTCAGAGGAATCAAAGGCCCTCATATGGTGGTTGCTCCCAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTACGTGCAGTAAAGTTCCTTGGCAACCCTGAAGAGAGGAGATATATAAGGGAGGAATTACTGGTAGCCGGGAAGTTCGATGTCTGTGTTACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTACATTGCGTCGATTTAGTTGGCGCTACATCATTATCGATGAAGCCCATCGAATTAAGAATGAAAATTCCTTGCTTTCCAAAACAATGAGACTCTACAACACAAATTATCGCCTCCTTATTACCGGCACACCGCTTCAGAACAATCTTCATGAACTCTGGTCTCTGCTCAACTTTCTTCTTCCCGAAATTTTTAGTTCTGCTGAAACCTTTGATGAGTGGTTTCAAATCTCTGGTGAGAATGACCAACAAGAGGTTGTCCAGCAATTACACAAGGTCCTCCGGCCATTTCTTCTTCGTAGGTTGAAGTCCGATGTTGAGAAAGGGTTGCCGCCTAAAAAGGAAACCATTCTTAAAGTAGGTATGTCACAAATGCAGAAACAGTACTATAGAGCGCTTCTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAACGGAAGCGCCTCCTGAATATAGCTATGCAGCTACGAAAATGTTGCAATCATCCATATCTTTTCCAGGGTGCTGAACCCGGTCCTCCATATACAACAGGGGATCATCTCATTACTAATGCTGGTAAAATGGTTCTCTTGGATAAGTTACTTCCTAAATTGAAGGAGCGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATTTAATGTTTCGTGGGTATCACTATTGTCGCATAGATGGCAATACCGGTGGAGATGAGCGGGATGCTTCCATTGACGCTTTCAACAAACCTGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGAGCTGGAGGTCTTGGAATTAACCTTGCTACTGCTGATGTTGTCATCCTATATGATAGTGACTGGAACCCACAAGTTGACTTGCAAGCCCAGGATCGTGCTCATAGGATAGGTCAAAAGAAAGAAGTCCAAGTTTTTCGGTTTTGCACAGAGTATACAATTGAGGAGAAGGTCATTGAAAGGGCTTACAAAAAGCTTGCACTTGATGCTCTAGTGATTCAGCAAGGACGGTTGGCTGAGCAAAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCAGAAATGGTTTTCAGTTCCAAAGATAGCACTATTACAGATGAGGACATTGATAGAATCATTGCTAAAGGAGAGGAAGCAACTGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAATTCAAGATGGATGACACTGCTGAGTTATATGATTTTGATGATGATAAGGATGAGAACAAAGTTGATTTCAAAAAAATTGTGAGTGACAATTGGATTGAACCACCAAAAAGAGAGCGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACATTACGACAAGGAGGTCCTGCTAAACCAAAGGAGCCACGAATTCCTAGGATGCCTCAGTTGTAA 2352 0.4328 MARPSKPQVSSDEAISSGSSSEEEEQVNQQINEEDEEELEAVARQASSDDDDDEAGNDNSHDDDEDPAAAGDADEDEQGEDAVDPGKREKARLKEMQKMKKQKIQEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKARGRGRHASKVTEEEEDEEYLKEEEDGLSNTRLVTQPSCIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAVKFLGNPEERRYIREELLVAGKFDVCVTSFEMAIKEKSTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYHYCRIDGNTGGDERDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDENKVDFKKIVSDNWIEPPKRERKRNYSESEYFKQTLRQGGPAKPKEPRIPRMPQL 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip07g00002 783 Coils Coil 93 113 - -
Aip07g00002 783 CDD DEXHc_SMARCA1_SMARCA5 191 411 IPR044754 GO:0005524
Aip07g00002 783 Gene3D - 195 410 IPR038718 -
Aip07g00002 783 MobiDBLite consensus disorder prediction 142 174 - -
Aip07g00002 783 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 499 650 IPR001650 -
Aip07g00002 783 SMART helicmild6 525 609 IPR001650 -
Aip07g00002 783 PANTHER SNF2/RAD54 HELICASE FAMILY 9 783 - -
Aip07g00002 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 692 IPR027417 -
Aip07g00002 783 Coils Coil 20 40 - -
Aip07g00002 783 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 783 - -
Aip07g00002 783 MobiDBLite consensus disorder prediction 81 96 - -
Aip07g00002 783 MobiDBLite consensus disorder prediction 9 26 - -
Aip07g00002 783 Gene3D - 415 707 IPR027417 -
Aip07g00002 783 MobiDBLite consensus disorder prediction 51 80 - -
Aip07g00002 783 Pfam Helicase conserved C-terminal domain 497 609 IPR001650 -
Aip07g00002 783 Gene3D ISWI, HAND domain 746 783 IPR036306 GO:0003677|GO:0006338|GO:0031491
Aip07g00002 783 MobiDBLite consensus disorder prediction 1 96 - -
Aip07g00002 783 CDD SF2_C_SNF 495 620 - -
Aip07g00002 783 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 409 IPR027417 -
Aip07g00002 783 MobiDBLite consensus disorder prediction 748 783 - -
Aip07g00002 783 Pfam SNF2-related domain 207 474 IPR000330 GO:0005524|GO:0140658
Aip07g00002 783 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 371 IPR014001 -
Aip07g00002 783 SMART ultradead3 190 382 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip07g00002 Aip-Chr7 54920 61054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip07g00002 186 636 RAD5 or RAD16-like Gene Family AT1G02670 27.103 8.33e-42 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip07g00002 SNF2_N 9.2e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip07g00002 K11654 - cit:102630394 1339.32