Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03916 ATGATGAAGCCATTGAAGAATATTGTGAAGGAGCTCAAGGAGATTGGAGAAAGCATTAGCAACATGTATAGAAACAACAACAACAACAACAACAACAAGCATAGTGTTCATCATCATCATTATAGGCATGGAAAATCACACATTGCACCTGAATGTTCATCACCAATATCATCACTATCATCATCACCATCACAATCATCATTATTATCAGTAACAGTACCAGCATGCTCTTCAGCCATGGCAGCAAGAGATCAGAGCAGGTGGGCTAACTTGCCACCTGAGTTGCTGTTAGACATAATCAAAAGGGTGGAAGGAAGTGAAACTTCATGGCCTTCTAGAAGAGTGGTTGTGGCATGTGCCTCAGTTTGCAGAACTTGGAGACAGATAACAAAGGATGTGGTTAAGACACCAGAACAGTGTGGTTGGATCACTTTCCCTATATCACTCAAGCAGCCTGGTCCAAGAGACACTCCAATACAGTGTTTTATTAAGAGAGAAAGGGCCTCTTCAACATATTGTTTATACCTTGGTCTCAGCCCTGCTCCTTCTGGTGATATGAGCAAACTACTACTGGCTGCAAAGAAGACTAGAAGGGCAACATGTACCGAATTCTTCATATCATTGGTCGCGGACGATTTCTCGCGAGCTAGCACTACTTACATCGGAAAACTAAGGTCTAATTTTCTTGGCACCAAGTTCATGATCTTGGATGGTCAGCCTTCACTCGATCCTTCTTTGCTTCAATCGAATTGCAAATCGCAGCAAAGAGTACACCTGAAACAGGTTCTTCCAAGAGTTGCTGCTTCTTCTTCTTCTTCTTCTGCTAACTATAATGTAGCAACAGTCTCTTATGAACTCAATGTTCTGAGAACAAGAGGGCCGAGGCGAATGCGATGTGCAATGCACTCAATCCCTGTATCATCAATCCAAGAAGGAGGAACTGCTCCAACTCCTTTAAATTTCACCAATTTCTTGAATGATCATGAATGTACTACTCTGTCTCTCTCCAAAGCGAAGAAGCCAGTAACTGAAACCGGGTCAGCTAGTACTCTCAGTACTCCAGAATCAAGCCATTGTGCAAGAGAACTTGTTTTGAAAAACAAGGCTCCTAGATGGCATGAGCAACTTCAATGTTGGTGCTTGAATTTCAAGGGCCGAGTCACAGTTGCGTCTGTTAAGAACTTTCAGCTTGTAGCAGCTGTAGAGCCTTCTCAAAATGTTTCTACCGCGGAACAAGAGAAAGTGATACTACAATTTGGAAAGATTGGGAAGGACATATTCACCATGGATTACCGGTATCCCCTTTCGGCCTTTCAAGCCTTCGCAATCTGTTTAAGCAGCTTCGACACCAAACCTGCTTGCGAATGA 1368 0.4298 MMKPLKNIVKELKEIGESISNMYRNNNNNNNNKHSVHHHHYRHGKSHIAPECSSPISSLSSSPSQSSLLSVTVPACSSAMAARDQSRWANLPPELLLDIIKRVEGSETSWPSRRVVVACASVCRTWRQITKDVVKTPEQCGWITFPISLKQPGPRDTPIQCFIKRERASSTYCLYLGLSPAPSGDMSKLLLAAKKTRRATCTEFFISLVADDFSRASTTYIGKLRSNFLGTKFMILDGQPSLDPSLLQSNCKSQQRVHLKQVLPRVAASSSSSSANYNVATVSYELNVLRTRGPRRMRCAMHSIPVSSIQEGGTAPTPLNFTNFLNDHECTTLSLSKAKKPVTETGSASTLSTPESSHCARELVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPSQNVSTAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03916 455 Gene3D Tubby Protein; Chain A 146 455 IPR025659 -
Aip06g03916 455 PANTHER TUBBY-RELATED 4 455 - -
Aip06g03916 455 ProSitePatterns Tub family signature 1. 383 396 IPR018066 -
Aip06g03916 455 SUPERFAMILY Tubby C-terminal domain-like 137 455 IPR025659 -
Aip06g03916 455 PANTHER TUBBY-LIKE F-BOX PROTEIN 4 455 - -
Aip06g03916 455 Pfam F-box domain 88 135 IPR001810 GO:0005515
Aip06g03916 455 ProSitePatterns Tub family signature 2. 440 455 IPR018066 -
Aip06g03916 455 Gene3D - 82 134 - -
Aip06g03916 455 SUPERFAMILY F-box domain 81 132 IPR036047 GO:0005515
Aip06g03916 455 Pfam Tub family 149 450 IPR000007 -
Aip06g03916 455 PRINTS Tubby superfamily signature 204 220 IPR000007 -
Aip06g03916 455 PRINTS Tubby superfamily signature 276 303 IPR000007 -
Aip06g03916 455 PRINTS Tubby superfamily signature 365 382 IPR000007 -
Aip06g03916 455 PRINTS Tubby superfamily signature 383 399 IPR000007 -
Aip06g03916 455 PRINTS Tubby superfamily signature 412 431 IPR000007 -
Aip06g03916 455 PRINTS Tubby superfamily signature 433 455 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03916 Aip-Chr6 136842089 136847279 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03916 42 455 TUB Transcription Factor Family AT1G47270 59.016 1.84e-163 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aip06g03916 Tub 7.3e-103 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03916 K19600 - gmx:100796250 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03916 06 136842089 136847279 Aip06g03916 06 136842089 136847279 ECH