Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03879 ATGGGTTGGCTTAGCAAATTTTTTAAAGGCTCCGACCAAAAGATTTCGGAAGGGCATTACCATTCATATTATAACGGGGATGCGGATTCTTACTTGCCATCGACGTCTGGTGTAACAAACGATGTTTGGCCTGAGAATGAGAACGAAGATATAGATCGTGCCATTGCATTATCTCTGGCAGAGCAAAATCATAGAGGAAACCATGTAAATGACTACAGATCTCAATTAGAAGAAGATGAACAACTTGCCAGAGCTATAGAAGAAAGCCTAAATCTAGAGTCTCCTCCCAAATATGGAAACGAAAACATGTATCAACCCCATCCGGCGGTTCCAATTCCAGTACCAGTGTATTTCCCAATGGGATCAAGGATTTGTGCCGGCTGCCATAATGAGATTGGTTATGGACGATACCTAAATTGTTTGAATGCTTTCTGGCATCCTGAATGCTTCCGCTGTCATGCTTGCAACCTACCGATCTCCGATTATGAGTTCTCCACGTCGGGAAATTACCCTTACCATAAATCATGCTATAAGGAAAGCTACCATCCAAAATGTGACGTCTGCAAGCATTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCATTCTGGGTCCAAAAATATTGCCCTTCTCATGAACACGATAACACTCCTAGATGTTGCAGCTGTGAGCGAATGGAGCCACGAGAGACTGGATATATTGGTCTTAATGATGGCCGGAAGCTTTGCTTAGAGTGCCTCGACTCTGCTATCATGGATACAAGCGAATGCCAACCGCTTTATGTCGATATACAAAGATTTTATGAAAGCTTAGACATGAAATTGGAGCAGCAAATTCCACTGCTCTTGGTTGAAAGACAAGCCCTGAATGAAGCAAGAGAGGGGGAGAAGCATGGCCACTATCACATGCCGGAAACTCGAGGACTCTGCCTTTCAGAAGAGCAGACGATCAGCAGCATCTCAAGACGACCGAGACTTGGAGCAGGAAATAGAGCGGTCGACATGAGAACACAATCATACAAATTGACCAGACGTTGTGATGTGACGGCAATTCTCATTTTATTCGGACTTCCAAGATTGCTTACTGGATCGATCCTAGCTCACGAGATGATGCATGCTTGGCTGCGGCTTAAAGGCTACCGAACCTTAAGTCAAAACGTCGAAGAAGGTATATGTCAGGTTATGGCATACATGTGGTTGCATTCTGAGCTCACTTCGGCGTCAGCCTCATCCTCATCTTCAACATCTAGAAAAGGGAAAAGACCCCCTTTTGAGATGAAGCTCGGCGAGTTCTTCAAGCACCAGATTGAATCCGACATCTCGCCAGTTTACGGAGACGGGTTTAGGGCAGGTCACCAAGCAGTACAGAAGTATGGTCTTCAGAAGACCCTAAACCATATATGGATGACTGGTACTTTTCCATTTTGA 1440 0.4465 MGWLSKFFKGSDQKISEGHYHSYYNGDADSYLPSTSGVTNDVWPENENEDIDRAIALSLAEQNHRGNHVNDYRSQLEEDEQLARAIEESLNLESPPKYGNENMYQPHPAVPIPVPVYFPMGSRICAGCHNEIGYGRYLNCLNAFWHPECFRCHACNLPISDYEFSTSGNYPYHKSCYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDNTPRCCSCERMEPRETGYIGLNDGRKLCLECLDSAIMDTSECQPLYVDIQRFYESLDMKLEQQIPLLLVERQALNEAREGEKHGHYHMPETRGLCLSEEQTISSISRRPRLGAGNRAVDMRTQSYKLTRRCDVTAILILFGLPRLLTGSILAHEMMHAWLRLKGYRTLSQNVEEGICQVMAYMWLHSELTSASASSSSSTSRKGKRPPFEMKLGEFFKHQIESDISPVYGDGFRAGHQAVQKYGLQKTLNHIWMTGTFPF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03879 479 Coils Coil 69 89 - -
Aip06g03879 479 CDD LIM_DA1 125 177 - -
Aip06g03879 479 Gene3D Cysteine Rich Protein 119 183 - -
Aip06g03879 479 ProSitePatterns LIM zinc-binding domain signature. 125 159 IPR001781 -
Aip06g03879 479 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 151 206 - -
Aip06g03879 479 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 77 96 IPR003903 -
Aip06g03879 479 Pfam Protein DA1 275 473 IPR022087 -
Aip06g03879 479 ProSiteProfiles LIM domain profile. 123 183 IPR001781 -
Aip06g03879 479 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 150 - -
Aip06g03879 479 Pfam Ubiquitin interaction motif 77 90 IPR003903 -
Aip06g03879 479 Pfam Ubiquitin interaction motif 47 62 IPR003903 -
Aip06g03879 479 SMART uim 46 65 IPR003903 -
Aip06g03879 479 SMART uim 77 96 IPR003903 -
Aip06g03879 479 SMART lim_4 124 176 IPR001781 -
Aip06g03879 479 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 46 65 IPR003903 -
Aip06g03879 479 PANTHER PROTEIN DA1-RELATED 2 1 479 IPR045218 -
Aip06g03879 479 Pfam LIM domain 125 179 IPR001781 -
Aip06g03879 479 PANTHER PROTEIN DA1-LIKE 1 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03879 Aip-Chr6 136485482 136490650 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip06g03879 DA1-like 6.8e-96 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03879 - - gmx:100783253 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03879 06 136485482 136490650 Aip06g03879 06 136485482 136490650 ECH