Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03837 ATGGTGTCGCTGAAGCTGCAGAAGCGATTGGCGGCGAGCGTTCTCAAGTGTGGAAGAGGAAAAGTGTGGCTTGATCCCAATGAAGTCAACGAAATCTCCATGGCCAATTCTCGCCAGAACATTCGAAAGTTGGTTAAGGATGGATTTATCATCAGGAAGCCAACCAAGATTCACTCACGCTCCCGGGCTCGCAGGATGAAGGAAGCCAAGCGGAAGGGTCGTCACTCCGGATACGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACCAAAGTACTTTGGATGAGGAGGATGCGTGTTCTAAGGCGATTGCTTCGTAAGTACAGGGAATCAAAGAAGATCGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTTTTGATGGAGAGCATCCACAAATCCAAGGCTGAGAAGGCTAGAGAAAAGACTTTGTCTGATCAGTTCGAGGCCAAGCGCGCAAAGAACAAGGCTAGCAGGGAAAGGAAATCTGCTCGAAGGGAGGAACGCCTGGCCCAAGGTCCGAGAGAGAAGGTGACAGCAGCACCTAGTGCTCCACCTGCTACAGCATCCCAGCCTGCCCAAGCACCAAAGAAATCCAAGAAGTAA 639 0.5008 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKSARREERLAQGPREKVTAAPSAPPATASQPAQAPKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03837 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
Aip06g03837 212 MobiDBLite consensus disorder prediction 195 212 - -
Aip06g03837 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Aip06g03837 212 MobiDBLite consensus disorder prediction 144 185 - -
Aip06g03837 212 MobiDBLite consensus disorder prediction 144 212 - -
Aip06g03837 212 Gene3D - 57 191 - -
Aip06g03837 212 MobiDBLite consensus disorder prediction 57 79 - -
Aip06g03837 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Aip06g03837 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Aip06g03837 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Aip06g03837 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Aip06g03837 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Aip06g03837 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Aip06g03837 212 Coils Coil 161 181 - -
Aip06g03837 212 MobiDBLite consensus disorder prediction 57 85 - -
Aip06g03837 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03837 Aip-Chr6 136088590 136091476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03837 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.962 7.99e-127 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03837 K02885 - gmx:100527501 360.147