Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03714 ATGGAATTTCTAGGAGCATTCTCTAATAATATAGAATTGGATTGCTTCAAAATGTTTTCAACTGAAAAAGAGCATGATTTCACTTACACTACTACTACTTCACAATTATTTCTAGATCAACGTTCATCACTTCTTGTAGGAGAAGATGATGAATTGAACTTTGGATTAGTACAATCCACAATTTCCTCCAATCTTATTAGTGATGAAAATGAGCATTATTTGTTTCATTCTTTAGATGCTAATCCCAACACAAAAATGTTGCATTATAAGTCACAAGAAGAGAGTAGTTACAATAGCAGCAATTTGAGTGGTGGTGACACTAATTTCTTCAATGCCAACATGGATCTTACAACAAACTACTACTATTCTAGTAATTACCATGATGATCATGTGCTAGCAAATGATGTTTCTATATCCATGGAGTTATGTATGGAGGAGAAGAATCTTGCATGTTTTGCTCCATCAATGGAAGACAATGATGATCATGGATTATTGGAGAATTATGATCATTATCAATGTCATCAAATGGAAAATGTTGATGTTGTGCAGCTCAAGAGGAAGATTGTTGAAGTACCAGAATTGGATGTGTCTGCTGATGAAAACAATACAAGTAACGGATATAAGAATCAAAAGAAAAAAATTTTCGTCGCGAAAGATGAGCAAGATTGCATGAAAAATGAAAAGTCTAGGAAGAGAAAAGTTGTTAGAAATGGGAATGAAGGAGAAGAGAGAAATAATAATGTAGGGTTAGATGGACAGAGCTCAAGTAGTAACATTAACATATGTGAGGATGACAATGCTTCTGAAGAAAACAATGGAGGGGTAACTTCGGTATCTCACTCAAATGGGAAAACAAGAACCATTAGAGGAACAGCAGCAGATCCCCAGAGTCTCTATGCAAGGAAAAGAAGAGAAAGGATAAATGCGCGATTAAGAATTTTGCAGAGTCTTGTTCCAAATGGAACAAAGGTTGATATAAGTACAATGCTTGAAGAGGCAGTTAATTACGTAAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATCTATGGATGTATGCTCCTCTTGCTTATAATGGACTTGACATTGGACTCAAACTCAATAACCTCAAGAATTTTTCACCATCACCATGA 1140 0.35 MEFLGAFSNNIELDCFKMFSTEKEHDFTYTTTTSQLFLDQRSSLLVGEDDELNFGLVQSTISSNLISDENEHYLFHSLDANPNTKMLHYKSQEESSYNSSNLSGGDTNFFNANMDLTTNYYYSSNYHDDHVLANDVSISMELCMEEKNLACFAPSMEDNDDHGLLENYDHYQCHQMENVDVVQLKRKIVEVPELDVSADENNTSNGYKNQKKKIFVAKDEQDCMKNEKSRKRKVVRNGNEGEERNNNVGLDGQSSSSNINICEDDNASEENNGGVTSVSHSNGKTRTIRGTAADPQSLYARKRRERINARLRILQSLVPNGTKVDISTMLEEAVNYVKFLQLQIKLLSSDDLWMYAPLAYNGLDIGLKLNNLKNFSPSP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03714 379 CDD bHLH_AtIND_like 292 354 - -
Aip06g03714 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 3 372 - -
Aip06g03714 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 291 340 IPR011598 GO:0046983
Aip06g03714 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 355 IPR036638 GO:0046983
Aip06g03714 379 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 3 372 - -
Aip06g03714 379 MobiDBLite consensus disorder prediction 224 297 - -
Aip06g03714 379 Pfam Helix-loop-helix DNA-binding domain 301 341 IPR011598 GO:0046983
Aip06g03714 379 MobiDBLite consensus disorder prediction 224 240 - -
Aip06g03714 379 Gene3D - 291 348 IPR036638 GO:0046983
Aip06g03714 379 SMART finulus 297 346 IPR011598 GO:0046983
Aip06g03714 379 MobiDBLite consensus disorder prediction 241 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03714 Aip-Chr6 134714107 134716283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03714 163 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27740 50.000 4.10e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip06g03714 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03714 - - aip:107648570 754.592