Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03713 ATGGAAGTTGTTGTTGCTCTTGATGTTAAAGTTGTTGTTGCTGTGAATGGTGGTGTTGAGGGAAGAAGGGGAAGTATACGTTGGGGAGGGGGTTGTGATGCGGCGAGGACTGCGATGGGGGAGAAGTGTGCGTTGGGGATGGGGGCTGCGACAGGGAGGGAGAGGGAAGGGGAGGGAGTGTGCGTTGGGAGGGAACTTTGGGAGTGGTTTGCCAAGTCACCAAAACACGGTGGCCACATCAGCATTGTGCTTACCGGAAATTTGCTCCGGCGAGCTCGGGGACACGCTTGTCAAATTTTAAAATCTTTTAAGGACCACTTTGTCAATAACAATAGTGAGATGGCTCTGGAAGCTCTGAATTCGCCTACGGCGAACTCTTTCGAAAACAGCCACAACCACGGCCACAGCCAGTTTGAATCTTGGACTAAAAGAAAGCGCTCAAGGCGAGGATCTTCTCAACCTCGCTTTGACCACCACAATCCGCCGTGCACGGAGGAAGAGTATCTCGCTCTATGCCTCATCATGCTTGCTCGCGGACACGCTGGACCTGGAACCGACGCCGTTCTTCCTCCGCCGCAACTTACCGCCGGAGATTCTTCAACCGCCGTAAAACTCAGCTACAAATGCTCCGTCTGCAACAAGGCTTTTCCGTCTTACCAAGCTCTCGGCGGACACAAGGCGAGTCACCGGAAAAACACTGCCGCCGCCGGCGGAGGAGATGATAACTCTACGTCTTCAGCAGCCACCACTAGCTCCGCCACAGCTGGCGTCGCCGTGTCCGGCGGCGGTTCGGGAAAGGCGCACGAGTGCTCAATTTGTCACAAGACTTTCCCGACGGGACAGGCGTTAGGCGGACACAAGAGGTGCCACTACGACGGCGGCGCGGCGGGGAGTGCAGGCGGTGTTACGACGGAGGAAGGTGTGGGATCTACTCACACCGCCTTTAGCCACCGCGACTTCGACCTTAACGTTCCGGCGTACGGTGAATTCTCGAGGGACGAAGAAGTAGAGAGCCCTCACCCTGTGATGAAGAAGAAGCCACGTGTTTTCATGGTGCAGAAGATCGAAATCCCTCAAATCCGTTAG 1086 0.5552 MEVVVALDVKVVVAVNGGVEGRRGSIRWGGGCDAARTAMGEKCALGMGAATGREREGEGVCVGRELWEWFAKSPKHGGHISIVLTGNLLRRARGHACQILKSFKDHFVNNNSEMALEALNSPTANSFENSHNHGHSQFESWTKRKRSRRGSSQPRFDHHNPPCTEEEYLALCLIMLARGHAGPGTDAVLPPPQLTAGDSSTAVKLSYKCSVCNKAFPSYQALGGHKASHRKNTAAAGGGDDNSTSSAATTSSATAGVAVSGGGSGKAHECSICHKTFPTGQALGGHKRCHYDGGAAGSAGGVTTEEGVGSTHTAFSHRDFDLNVPAYGEFSRDEEVESPHPVMKKKPRVFMVQKIEIPQIR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03713 361 MobiDBLite consensus disorder prediction 237 258 - -
Aip06g03713 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 290 IPR013087 -
Aip06g03713 361 MobiDBLite consensus disorder prediction 123 161 - -
Aip06g03713 361 Gene3D Classic Zinc Finger 205 290 - -
Aip06g03713 361 Pfam C2H2-type zinc finger 207 231 - -
Aip06g03713 361 Pfam C2H2-type zinc finger 267 292 - -
Aip06g03713 361 ProSitePatterns Zinc finger C2H2 type domain signature. 209 229 IPR013087 -
Aip06g03713 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 234 IPR013087 -
Aip06g03713 361 SMART c2h2final6 268 290 IPR013087 -
Aip06g03713 361 SMART c2h2final6 207 229 IPR013087 -
Aip06g03713 361 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 114 350 IPR044653 GO:0003700
Aip06g03713 361 MobiDBLite consensus disorder prediction 230 260 - -
Aip06g03713 361 PANTHER ZINC FINGER PROTEIN ZAT10 114 350 - -
Aip06g03713 361 ProSitePatterns Zinc finger C2H2 type domain signature. 270 290 IPR013087 -
Aip06g03713 361 SUPERFAMILY beta-beta-alpha zinc fingers 207 290 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03713 Aip-Chr6 134689248 134695014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03713 114 357 C2H2 Transcription Factor Family AT1G27730 52.734 9.39e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g03713 zf-C2H2_6 1.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03713 - - jre:109014213 238.424