Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03629 ATGAAGAAGGAACGTGCACCATGTCCGGGTGTAGTACGGCCAAGATTTAAACCCAGATTTAAATCCAATAAACGTCCATGCAACAAAAGCAAGCTTGATGCGGTTATACAACGCCTTAAACTTTTGAAAAACATCAAGGCCCGATTCAAATACAATTTGGATATTTACAGCTCGCTTCTAAACAAAGTAGTAAAGTACATGACTGGAAGAAAGTCTATCACCCAACTGAGTTCAGATGCTGCTATACTTATGCGGGGCCATCCAGATCTTATTGACCAGTTTAACAAATGGATTCCCCGTACTCGTCAAGATTCATGCACGTTACTCTCCCACCACTTGGCAGCAACACATTTGGAGAACCGTGATCTACAGGATGAGGGCGATGATGAAGTATCTACGGATACGGATACTGATACGGATAGTGATACTGAAGATTGGGACTGGTTGAAAAGGTCGACTAAGCTTGGTGGATGTACAGACCCCTATAAAGTTTGGAAAATTTGGAAAAAGATCAAGGATCGGTTTAAGTGCGATATGGAGATTTGCGAGTCGCTAAGAAATAAGGTGGACAAGTACAAAGATGGAAGAAAGTCTATCATCCAACTAAGTTCGGACGTTGCTACACTTTTGCGGGGCCATCCCGATCTTATTGAGGAATTTCGCAAATGGATTCCCATCACTCCGAATGAGGGATCCGATGAAGTATCTAGCGATACCAGCAGCTTTAGTTCCACTGATACTGACACTGATATATACACTGATATATCTTCAGATGCCATGGATTAA 786 0.4224 MKKERAPCPGVVRPRFKPRFKSNKRPCNKSKLDAVIQRLKLLKNIKARFKYNLDIYSSLLNKVVKYMTGRKSITQLSSDAAILMRGHPDLIDQFNKWIPRTRQDSCTLLSHHLAATHLENRDLQDEGDDEVSTDTDTDTDSDTEDWDWLKRSTKLGGCTDPYKVWKIWKKIKDRFKCDMEICESLRNKVDKYKDGRKSIIQLSSDVATLLRGHPDLIEEFRKWIPITPNEGSDEVSSDTSSFSSTDTDTDIYTDISSDAMD 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03629 261 PANTHER SIN3B-RELATED 37 114 IPR039774 GO:0003714
Aip06g03629 261 PANTHER SIN3B-RELATED 169 237 IPR039774 GO:0003714
Aip06g03629 261 ProSiteProfiles PAH domain profile. 28 101 IPR003822 GO:0006355
Aip06g03629 261 ProSiteProfiles PAH domain profile. 151 227 IPR003822 GO:0006355
Aip06g03629 261 Gene3D Paired amphipathic helix 39 99 IPR036600 GO:0006355
Aip06g03629 261 PANTHER SIN3A, ISOFORM G 37 114 - -
Aip06g03629 261 PANTHER SIN3A, ISOFORM G 169 237 - -
Aip06g03629 261 Gene3D Paired amphipathic helix 168 225 IPR036600 GO:0006355
Aip06g03629 261 MobiDBLite consensus disorder prediction 122 142 - -
Aip06g03629 261 MobiDBLite consensus disorder prediction 230 261 - -
Aip06g03629 261 MobiDBLite consensus disorder prediction 125 142 - -
Aip06g03629 261 SUPERFAMILY PAH2 domain 40 100 IPR036600 GO:0006355
Aip06g03629 261 MobiDBLite consensus disorder prediction 228 261 - -
Aip06g03629 261 SUPERFAMILY PAH2 domain 169 225 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03629 Aip-Chr6 133692378 133695298 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip06g03629 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03629 - K11644 adu:107495749 259.61