Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03606 ATGGGCCTGGCCCAAAAACAGCTGCCGCCTCCTTCTCCTCTTCCTCCTCCACCACGTTTGTGCGACAAGATGGATTCTGGGATTAAGCATGCTGTTGTTGTGAAAGTTATTGGCCGTACTGGATCCAGAGGTCAGGTGACTCAGGTTAGAGTGAAGTTCTTGGATGATCAGAACCGTCACATTATGAGGAATGTGAAGGGACCAGTTAGAGAAGGTGATGTTCTCACCCTGCTTGAATCTGAAAGAGAAGCAAGGAGTTTTTGGGATTCAGAAAACGATTTTATAAATAGCTTAAAACTAGGGTTTATCACACTACAGCGGAGCTGCAACAAGAGCGAGAGAGCTTCGAAGCTTAGTGCCGCCTCCTTCTCCTCAACCATGGCTGCTGCTGCTGCTGCTGCTCCTCCTCCTACCGAAGTTGATTCCACACAGCTCGACGTTAAGCTTTTCAACAGATGGAGCTTCGACGACGTCCAGGTGACTGATATCTCCCTGGCTGATTACATTGGAGTCGCGCCGTCGAAGCATGCGACGTACGTTCCCCACACCGCCGGTAGGTACTCGGTGAAGCGTTTCAGGAAGGCACAGTGCCCGATCGTAGAGAGGCTCACTAACTCCCTCATGATGCATGGAAGAAACAACGGTAAGAAGCTTATGGCTGTTAGGATCATCAAACACGCCATGGAAATCATTCACTTGCTTACCGACCAGAACCCTATCCAAGTCATCGTTGATGCCGTTATCAACAGTGGTCCTCGTGAAGATGCAACTCGTATTGGGTCTGCTGGAGTTGTTAGGAGGCAGGCTGTTGATATCTCGCCTCTTCGCCGTGTCAATCAGGCCATCTATCTTCTAACAACAGGTGCACGAGAAGCTGCTTTCAGGAACATTAAGACAATTGCCGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGTTCATCGAATAGCTATGCTATCAAGAAAAAGGATGAGATAGAGAGAGTCGCCAAGGCTAATCGTTAA 1008 0.4851 MGLAQKQLPPPSPLPPPPRLCDKMDSGIKHAVVVKVIGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDVLTLLESEREARSFWDSENDFINSLKLGFITLQRSCNKSERASKLSAASFSSTMAAAAAAAPPPTEVDSTQLDVKLFNRWSFDDVQVTDISLADYIGVAPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03606 335 Hamap 30S ribosomal protein S28e [rps28e]. 24 88 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aip06g03606 335 Pfam Ribosomal protein S28e 28 86 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aip06g03606 335 Gene3D Ribosomal protein S7 domain 128 335 IPR036823 -
Aip06g03606 335 TIGRFAM uS7_euk_arch: ribosomal protein uS7 147 335 IPR005716 GO:0003735|GO:0006412|GO:0015935
Aip06g03606 335 CDD S1_S28E 29 85 IPR000289 GO:0003735|GO:0005840|GO:0006412
Aip06g03606 335 Gene3D - 22 87 IPR012340 -
Aip06g03606 335 PANTHER RIBOSOMAL PROTEIN S7 131 335 IPR000235 GO:0006412
Aip06g03606 335 CDD uS7_Eukaryote 148 335 IPR005716 GO:0003735|GO:0006412|GO:0015935
Aip06g03606 335 SUPERFAMILY Nucleic acid-binding proteins 25 87 IPR012340 -
Aip06g03606 335 Pfam Ribosomal protein S7p/S5e 189 335 IPR023798 -
Aip06g03606 335 ProSitePatterns Ribosomal protein S7 signature. 201 227 IPR020606 GO:0003723|GO:0003735|GO:0006412
Aip06g03606 335 SUPERFAMILY Ribosomal protein S7 148 335 IPR036823 -
Aip06g03606 335 PANTHER 40S RIBOSOMAL PROTEIN S5 131 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03606 Aip-Chr6 133451946 133458223 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03606 131 335 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 88.889 1.06e-133 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03606 K02989 - gmx:100815850 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03606 06 133451946 133458223 Aip06g03606 06 133451946 133458223 ECH