Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03593 ATGAAAGGGAGCTTGAAGATGACGAACTTGTTGTCTCGCATCAGAAACTCCTCAAAGAAAACCAAAACTAGCACTAACAAACACAGGAACAGAAAAAGATTCAATCTTAGAAACCAGAACGCCATTTCCATTCCCAAAGACTTGCCTTCTCCCCATGAAGAAGAAGATGAAGAAGGAGAAGAGAACGCTGAAGAAGGTTTCAAGCTCAAAAGCTCTGCCCCATTACTCACACATGGCGTTCAACCCTTGGGGAACCTCTACCTCAACCCAGGTTCCATCAACTCCAGAGACACAGGCTTAGGTAACCTTCATACCCTTTCTGACGAGCTTGTTCTTGAGATTCTAGGGTTCTTGGATAGTACTAATTTGGGGGTTTTGTCCACTGTGAGTAAGTCCTTTTATGTTTTCACAAACCACGAACCTCTTTGGAGGAACCTTGTGTTGGAGAATCTCAATGGTGGGTTTCAGTTCAATGGGGCTTGGAAATCAACTTATGTTGCTGCTTCCTACCCTTCATTTGATATATCAAGTAACGCACTTAAAAGCTTTAAAGTTAGAGACTTTTATTCTGATTATCTCTTTCAGAGTTGGCTCTGTGCTAATCTTGAAATGAAACCTGAGTGGTTGGAGAGGGATAATATTGTTAGGAAGAGGGGCATTTCAGTTGAAGAGTTTGTGTTGAATTTCGAGGAGCCTAATAAACCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGATGCACTGGAGAATTGGGATAGAGATTATTTGATGCAGTTGTCTGGTGATGTTAAGTTTGCAGTTGGGCCAGTTGAGATGAAGCTTGGAGACTATTTTCGCTACTCAGATCAAGTTAGAGAAGAAAGGCCATTGTATTTGTTTGATCCGAAATTTGCTGAAAAAGTTCCGAAATTAGGTTCTGAATATGAAGTCCCAGTGTATTTTCGAGAGGATTTGTTTGGTGTATTAGGCAGCGAGAGACCTGACTACAGGTGGATCATTATTGGTCCTGCCGGGTCCGGATCATCTTTTCATGTTGATCCGAATTCAACTTCAGCTTGGAATGCAGTGATCAAGGGATCAAAGAAATGGATACTATTTCCTCCTGATGTTATCCCGCCAGGCGTTCATCCTAGTCCTGATGGTGCAGAGGTTGCATCGCCAGTTTCGATAATTGAGTGGTTCATGAACTTCTACGGTGCAACAAAGAATTGGAAAAAGAAACCTGTTGAGTGTGTATGCAAAGCTGGAGAGGTTATCTTCGTACCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCCATTGCCATAACCCAAAATTATGTTAGTAGGAGAAATTTGTTAAATGTGCTAGATTTTCTTAATAGGCCAAATGCTAGCACACTGGTGTCTGGAACAAGGGATCGTGTGAATTTGTATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGAAATGGATGAACTGGCCAGAAAAGAAGCAGAGAAAAAGATCCAGCAGAAGAAACTCTCATTCTGGGATTCTGTCTCAGATTCCAATGCCGGAGCTTTCAAGTTCTCTTTCTAG 1575 0.419 MKGSLKMTNLLSRIRNSSKKTKTSTNKHRNRKRFNLRNQNAISIPKDLPSPHEEEDEEGEENAEEGFKLKSSAPLLTHGVQPLGNLYLNPGSINSRDTGLGNLHTLSDELVLEILGFLDSTNLGVLSTVSKSFYVFTNHEPLWRNLVLENLNGGFQFNGAWKSTYVAASYPSFDISSNALKSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVLNFEEPNKPVLLEGCIDNWDALENWDRDYLMQLSGDVKFAVGPVEMKLGDYFRYSDQVREERPLYLFDPKFAEKVPKLGSEYEVPVYFREDLFGVLGSERPDYRWIIIGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPVECVCKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLNRPNASTLVSGTRDRVNLYDKFKNAIEASFPGEMDELARKEAEKKIQQKKLSFWDSVSDSNAGAFKFSF 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03593 524 SUPERFAMILY Clavaminate synthase-like 216 457 - -
Aip06g03593 524 ProSiteProfiles F-box domain profile. 100 146 IPR001810 GO:0005515
Aip06g03593 524 SUPERFAMILY F-box domain 98 165 IPR036047 GO:0005515
Aip06g03593 524 SMART fbox_2 106 146 IPR001810 GO:0005515
Aip06g03593 524 ProSiteProfiles JmjC domain profile. 299 459 IPR003347 -
Aip06g03593 524 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 71 522 - -
Aip06g03593 524 MobiDBLite consensus disorder prediction 20 35 - -
Aip06g03593 524 SMART cupin_9 290 459 IPR003347 -
Aip06g03593 524 Gene3D - 96 172 - -
Aip06g03593 524 Pfam Cupin-like domain 224 442 IPR041667 -
Aip06g03593 524 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 71 522 - -
Aip06g03593 524 Pfam F-box domain 106 144 IPR001810 GO:0005515
Aip06g03593 524 Gene3D Cupin 185 444 - -
Aip06g03593 524 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03593 Aip-Chr6 133350241 133352407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03593 91 448 Glycosyltransferase AT1G78280 37.602 3.53e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip06g03593 Cupin_8 6.4e-24 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03593 - - lja:Lj1g3v4753250.1 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03593 06 133350241 133352407 Aip06g03593 06 133350241 133352407 ECH