Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03571 ATGTCCACCACACCACTCCTCAGCACCATCACCATCACAATAGCAGCACCTCAACAAACAAAATCGATTCCCTTCGCCACCACACCACGGTTCCTCTCACCATTCTCCGGCCACCACCAATTGCCTGTCTCCTCCTTCTTCAGAAGAAGCAGCAGCAGCAACAACCCGCCAGCGCCCGCTCCCGAAACACAGTGCCCCGTCCCTCGTGGCCAGCAGCCAATCAACGAGTACAACTCTCTCTCCACCTCCTTCCCCTTCTCCTGGGCCGCCGGCGACCCCGTCGAGTACGCGTCCCGCCTCTTCGCTCTCGGTGCGTCGTTTACGGTGCTTGTGGGCCTCCCTGTGGCGTGGTTCGGCACGGTGGGAGCGGAATCGGAGCCGCTGGAGAGGGTGCTGTGCGGCGCCTCCAGCGGTATCTTGGTTGTGACGCTTGCCGTCATGAGGATGTATCTCGGTTGGGCTTATGTTGGCAACCGACTGCTCAGTGCCACTGTTGAATATGAGGAGACAGGGTGGTATGATGGCCAGATATGGGTGAAAACTGCTGAAATTTTGGCTCGGGACAGACTCTTAGGATCATTTTCTGTCAAGCCTGTCCTCAACAGATTGAAAATCACTCTAGTCAGTTTGGGAACATCATTACTTGTATTTGCTCTTATTCTCTTCAACATCAATGGGGACCAAAGTTATCAATCATCAAAAGAAATCAGAGATCGGAATTATGAATCATGGACCTTCCTTGCATTCATTTGGAGGGAAGGAGTGAACAATATACTCAATAGTAGTTGGACTTTGAGAACTTGGGGTGGGATGCATGGCGGCAACAGACGTATGGCAAAGAGATGGGCAAACGTGCTTCTCAGCAATAACCCCAAAGAGAGTTTAATTTGTCTTCTGCAACCTTCTTCATCTTTTTCAAGCACAAGATCTTCTTCTTCAGCATACATTTTTCGCTGGATATTTGTGCTGAGTTGCGAGTTGAGTTGGGATGTCTCGACTTTTCACATGGAGTTAAATGCAAGTTATGACATTGAGCATTCTCGCTCCTCGGGAAGCTTAGAGCATGACATGTGGCCTTTAGATCCAATTGATCCAAAGAAGGCGAAATTTCCGTGTTGTTTAGTTTGGAATCCCCTCCCAGTTGTCTCATGGTTGGCGCCCTTCATTGGTCATGTTGGCATTTGCAGGGAGGATGGAGTTGTTTTAGATTTTTTTGGATCCAATTTTGTGAATGTTGATAATTTCGCTTTTGGTGGAGTCGCTAGATACTTGCAACTTGATCGAAGACAGTGTTGCTTCCCTCAAAACATATCTGCGCATTCATGCAAGCATGGCTACCTGCACTCCGAGTATGGGACAGCAATCACATGGGACGATGCCTTGCATTCGAGCATGCGCTATTTCGAGAACAAAACTTACAACCTCTTCACATGCAACTGCCATTTGTTCGTCGCCAACTGTCTTAACCGGCTATGTTACGGTGGATCAATGAGCTGGAACATGATAAATGTTGGAGCCTTGATACTATTCAAGGGTCATTGGGTTGATTTCATGTCAATTTTAAGGGCTTTCTTGCCTTTTGTTGTGGTTGTTTGCATTGGTGTTTTGATGGTTGGATGGCCCTTCTTAATTGGCCTATCATCATTTTCATTACTCTTAATTGGGTGggccggacGTGAGGAAAGGCTGGGTAATGAGCCTCCTGTTGAAACTGGGCCTGGAAAGCATAACGGGGTAAGGAAGGAATCAGAAACTGGAAATAAAGATGGGCTGGGCCAGGCACTTCCTCGTGGATCTGGGTCGAAGGAGCCGGGTAGAGAGAACCAACAGTATCAACGCGATTCTGATCCAGGTCTGTCGGTTCCCTGCGCTGCCGGGTCGAGGAACGTTGAAGCTATCCATGTCGGAGACGCAGTTCATGAAACTGGCTGCACGACTCTTCCCCGGGGAGATGAGGTGGATAACCGGGGTGTCTTCCCTGCCTGTGCATCGATGAGGGAGGCGTCTGAACGGCCGGGCATCACTGACGACTGGACTGGCGAGAGAACAGAGGAACGAGGCCGTGTGGAGGCTCTGTGCGCCGATGAAGGGTCCGAAGGAAGGGTGGTCCGAAGAAGGCCGGTTGCTgttgatgccgaaccggaagaggacagtctcactaaggaaggaaccagccgTTTCATTAGTCTTGCGGCGTCGAATAAGTGTTCTCATTTTGTCCTTGGCCCAAGCTCGGGATCGAGTTCAAGTTCGGGGTTTCAGTTATTGAACTCTCCTTTCGGTGACACCACATACACCAAGGTTTTCGTCGGAGGGCTGGCATGGGAGACTCAAAGTGAAACCATGCGCCGCCACTTCGAGCAATTTGGTGAAATTCTTGAGGCGGTAGTCATCACTGACAAGAACACCGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGGAGAGCGTGTGCTGATCCAACTCCAATCATTGATGGTAGAAGAGCTAATTGTAACTTGGCTTCACTCGGTCGACCACGCCCTCCGCTGCCTTATGGACGGATAAGACCAGCCTCCCCATATGTTGGAGGTTTGCAACCAGCGAGAGGAGCCTTTTTGGGAAGTTTCGGCTACCAGCAACCAGTTTCATACGGCTATCAACAGGGGTTGGTTTATCCACCTTATGGGTATACAACGTATGGACCTGAATACGTCTACCCACAGAGTATGTACAATCCATATATGGGTCAGCAGTACCTTCAGATATATGGAGTGCCTGGTGCACAATGCAAGGCTATACAATACAAGGCCATCAGATCGTGCCATATGGTGGATCTAATGTTAATGCGATGTCAACTTCACCTATGCCTGCCATTCAAACACCATATCCTAGTGGAATCGCTGCACCAGTTCCAGGCCAACCACAATTTATTGTTCCTGCTCCTTCTCCACAGTTTATGCAAGGCAGTGGTCCTGACCAAACCGCTGGGTGAGGGGGCAAATAAGGTACCATTAGTGTGCAGCAGGACTAGAGCAGTGGAACTGCTACTTGAGTGGCGGACTTCCAATCTAGCCTTGCAAGTTATTATTTTGCATTCTAGAGGTCATATATAG 3114 0.4859 MSTTPLLSTITITIAAPQQTKSIPFATTPRFLSPFSGHHQLPVSSFFRRSSSSNNPPAPAPETQCPVPRGQQPINEYNSLSTSFPFSWAAGDPVEYASRLFALGASFTVLVGLPVAWFGTVGAESEPLERVLCGASSGILVVTLAVMRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEILARDRLLGSFSVKPVLNRLKITLVSLGTSLLVFALILFNINGDQSYQSSKEIRDRNYESWTFLAFIWREGVNNILNSSWTLRTWGGMHGGNRRMAKRWANVLLSNNPKESLICLLQPSSSFSSTRSSSSAYIFRWIFVLSCELSWDVSTFHMELNASYDIEHSRSSGSLEHDMWPLDPIDPKKAKFPCCLVWNPLPVVSWLAPFIGHVGICREDGVVLDFFGSNFVNVDNFAFGGVARYLQLDRRQCCFPQNISAHSCKHGYLHSEYGTAITWDDALHSSMRYFENKTYNLFTCNCHLFVANCLNRLCYGGSMSWNMINVGALILFKGHWVDFMSILRAFLPFVVVVCIGVLMVGWPFLIGLSSFSLLLIGWAGREERLGNEPPVETGPGKHNGVRKESETGNKDGLGQALPRGSGSKEPGRENQQYQRDSDPGLSVPCAAGSRNVEAIHVGDAVHETGCTTLPRGDEVDNRGVFPACASMREASERPGITDDWTGERTEERGRVEALCADEGSEGRVVRRRPVAVDAEPEEDSLTKEGTSRFISLAASNKCSHFVLGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGGLQPARGAFLGSFGYQQPVSYGYQQGLVYPPYGYTTYGPEYVYPQSMYNPYMGQQYLQIYGVPGAQCKAIQYKAIRSCHMVDLMLMRCQLHLCLPFKHHILVESLHQFQANHNLLFLLLLHSLCKAVVLTKPLGEGANKVPLVCSRTRAVELLLEWRTSNLALQVIILHSRGHI 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03571 1037 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 768 824 IPR000504 GO:0003723
Aip06g03571 1037 MobiDBLite consensus disorder prediction 46 72 - -
Aip06g03571 1037 SUPERFAMILY RNA-binding domain, RBD 746 854 IPR035979 GO:0003676
Aip06g03571 1037 PANTHER PROTEIN REVERSION-TO-ETHYLENE SENSITIVITY1 333 556 - -
Aip06g03571 1037 CDD RRM_RBM24_RBM38_like 766 841 - -
Aip06g03571 1037 PANTHER UNCHARACTERIZED 333 556 IPR008496 -
Aip06g03571 1037 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 766 843 IPR000504 GO:0003723
Aip06g03571 1037 Pfam Protein of unknown function (DUF778) 430 514 IPR008496 -
Aip06g03571 1037 Pfam Protein of unknown function (DUF778) 379 428 IPR008496 -
Aip06g03571 1037 Gene3D - 761 844 IPR012677 -
Aip06g03571 1037 SMART rrm1_1 767 839 IPR000504 GO:0003723
Aip06g03571 1037 Pfam Conserved in the green lineage and diatoms 27 65 208 IPR009631 -
Aip06g03571 1037 MobiDBLite consensus disorder prediction 564 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03571 Aip-Chr6 133162334 133185930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03571 755 920 C2H2 Transcription Factor Family AT2G19380 31.638 2.00e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03571 K20726 - gmx:100817575 407.142