Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03549 ATGTTTCTAGAGATTCTGGTTCTTTTGTTTGTGCCTCCATCAGATCCCAAGTCTCCAAAGTCTTCTACAGAGAACCATAATCACCACAGTCTTCTTCTCTGCTGCCCAGTCCTGCACCTCCTTGACGTTGCTGCAGCTCAGTCCCGCAGCTCCTTATTGTTGCTACTCAGTCTCGTAGCTCCTCGTCGTTGCTGCTCAGCAGATCtaagttcttctcttcttcttctacagattcatcgtttgGGGGCTATCGTGGCAGTTGGAGCATCAAAGCCTACTGTTAAGGCTGATGCAACTGGATTCTTCAAGGTGAAATATAAGATGATACAACTGGATTTTTCAAGCCCTAACCTCTTCATCGAGCTCTCTCCGGATCTGTCGCATGGTGCCCTCTCGCTGTGCCTCGTCCTCTCGGCGTCCCTGTCGTGCCAAGCTTCCATATCCATGCTCTTGGTGACACTACCAATGGTTGCAATTCCACGAGTCCTCACTTCAATCCTCTTAACAAACACCATGAAGCTCTTGCCGATCATCACCGTCATGCTGGTGATTTGGGTAACATTCTTGCAGGCCTTGATGATTCAGTTGAATGGAGTGCATTCCATACTTGGCATGGCAGTTGTTGTGCATGCTGATCCTGATGACCTTGGAAGGGGAATTGAGCCCTGGACTTTCGTTCAGAGGTTAGGAGAAGCTGTTTTCATTCCAGCAGGTTGTCTTCACCAAGTCAGAAATCTGAAGGTGAAAAAAATTACAGTACACACAATGAAAGATATGGTTGAAAATTTGGAGAAAGCACGGTTAGTGTTTGCGATCGTTACTCCTATCTGGTTTGCATTGTGA 843 0.452 MFLEILVLLFVPPSDPKSPKSSTENHNHHSLLLCCPVLHLLDVAAAQSRSSLLLLLSLVAPRRCCSADLSSSLLLLQIHRLGAIVAVGASKPTVKADATGFFKVKYKMIQLDFSSPNLFIELSPDLSHGALSLCLVLSASLSCQASISMLLVTLPMVAIPRVLTSILLTNTMKLLPIITVMLVIWVTFLQALMIQLNGVHSILGMAVVVHADPDDLGRGIEPWTFVQRLGEAVFIPAGCLHQVRNLKVKKITVHTMKDMVENLEKARLVFAIVTPIWFAL 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03549 280 Pfam JmjC domain, hydroxylase 209 247 IPR003347 -
Aip06g03549 280 Gene3D Cupin 210 266 - -
Aip06g03549 280 SUPERFAMILY Clavaminate synthase-like 218 248 - -
Aip06g03549 280 SUPERFAMILY Cu,Zn superoxide dismutase-like 189 226 IPR036423 GO:0006801|GO:0046872
Aip06g03549 280 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE ISOFORM X1 218 254 - -
Aip06g03549 280 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 218 254 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03549 Aip-Chr6 132965039 132968302 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aip06g03549 JmjC 2e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03549 K15601 - mtr:MTR_8g465720 70.8626