Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03547 ATGGAAGGAGCAGTTAGAGTGAAGGAAGAAGAATCGGAACACTCACAACCTCAACCTCGGGAAGGGTTGAACGACGCGTCTCCACCTCCGTTTCTAACGAAGACGTTCGACATGGTGGATGACTCTTCCATTGACTCCATTGTTTCTTGGAGCATTACTCGCAACTCCTTTGTTGTTTGGGACCCTCACAGCTTCTCCACTACCATCTTGCCTCGCTACTTCAAGCATTCCAACTTCTCCAGCTTCATTCGCCAGCTCAACACATATGGATTTCGGAAAGTTGATCCTGATCGGTGGGAATTCGCTAACGAAGGTTTCTTGGCGGGACAGAAGCACTTGTTGAAGACCATAAAGAGAAGAAGAAATGTATCTCAGGGAACACAGCAAAGAGGAGGTGGAGGTCCTTGTCTCGAGTTGGGGGAGTATGGATTGGAAGGTGAGGTTGAAAGGTTGAGGAGAGACCGGAATGTGTTGATGGCCGAAATCGTGAAGTTGAGGCAGCAACAGCATAATTCACGAAATGAGGTGCTTCTGATGGAGACAAGGTTGCAAGCCACAGAGAAGAAACAACAACAGATGATGACTTTCCTTGCCAAAGCTCTGAACAATCCATCTTTCATGCAGCATTTGGCTGATAAGAATTCCCAGAACACGCAATTGTTTGGCGTTGAAGTTAAGAGGAAGAGGAGACTAACAGCTAGCCCAAACGTGGATCCGGTGACATCAGTAGCAGCAGTGCCTATTGAATCAGTAGTGGAGGACTATCGGAACCACGAACAAGAACTTGCAAATATCGAGTTCGAGATGGATACATTTTTCGCAACATCTTATGATACTGAGCCTAACGACGAAAATAATGACCCTGCATCAACAACTTCGGTATCCGGGGATACAATCTTGGAGGATTTTCTCAAGGAAGATTTGGTAACTGGGAACCCACAGGATGAAGTTGTGATTGGTGATTGTTCAAGAACTGATATTCCTGCGGAGGATTTGGCAGCAACGCCTAAGGATTGGACTGAGGAATTGCAGGACCTTGTGAATCATATGGGATATCTTGGTTCCAAACCTTAG 1074 0.4618 MEGAVRVKEEESEHSQPQPREGLNDASPPPFLTKTFDMVDDSSIDSIVSWSITRNSFVVWDPHSFSTTILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQKHLLKTIKRRRNVSQGTQQRGGGGPCLELGEYGLEGEVERLRRDRNVLMAEIVKLRQQQHNSRNEVLLMETRLQATEKKQQQMMTFLAKALNNPSFMQHLADKNSQNTQLFGVEVKRKRRLTASPNVDPVTSVAAVPIESVVEDYRNHEQELANIEFEMDTFFATSYDTEPNDENNDPASTTSVSGDTILEDFLKEDLVTGNPQDEVVIGDCSRTDIPAEDLAATPKDWTEELQDLVNHMGYLGSKP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03547 357 Coils Coil 248 268 - -
Aip06g03547 357 PRINTS Heat shock factor (HSF) domain signature 31 54 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03547 357 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03547 357 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03547 357 Gene3D - 23 121 IPR036388 -
Aip06g03547 357 MobiDBLite consensus disorder prediction 1 30 - -
Aip06g03547 357 Coils Coil 148 168 - -
Aip06g03547 357 SMART hsfneu3 27 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03547 357 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 11 319 - -
Aip06g03547 357 ProSitePatterns HSF-type DNA-binding domain signature. 70 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03547 357 Pfam HSF-type DNA-binding 31 120 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip06g03547 357 MobiDBLite consensus disorder prediction 1 18 - -
Aip06g03547 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 319 IPR027725 -
Aip06g03547 357 SUPERFAMILY "Winged helix" DNA-binding domain 27 120 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03547 Aip-Chr6 132912553 132915381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03547 17 357 HSF AT2G26150 52.770 1.38e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip06g03547 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03547 K09419 - gmx:100778558 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03547 06 132912553 132915381 Aip06g03547 06 132912553 132915381 ECH
Aip06g03547 06 132912553 132915381 Aip07g03426 07 124049827 124051418 PCT