Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03539 ATGGAATTCACCTCTTCTTCTTTGCAAATCACTCCCATTGAAGACCCATCCATACCACAAGAGTTTTATTTCGATAATTGCTTCTCCATCATCTTCAATTGCACCAAAAAATTGATCCAAATTATTGAACGCTCAAACCCAACTCCTGAGGTTCACTTTTCTTCTACTACAACTACAGCCACTGAAGCAATCTTGGTTCCTTGTACTCCACTCACAAACCTCAGCAGAGAAGACACAATCTTGTTGCATGAAATCTTTTCTTCACTACCTGTGTCACCTGAGGTATTGGACCAAATTTTACCTGACATAGGCGAAACTGCAAGAAGGATTTTAAGCAATGAAACGTGTGACTCCAACACGCGGGAGATGGTTGTGAACCTTCATGTTACCTCCTACATTGTTGTTCAAGATTCTGATATCTATAATGATGATCTCTGTCAAAACTTTTTTGAACGACTACAATCCGTGAATCTGTTGGAGAGATCGAAAACTGATGAGCAAGATGATGATGCTGAATGCGCCATTTGCTTGGAGAAGTTTGACGATGGTAATGAAGATTCAAGCGTAGAAATTGTTCGTACAAATTGCTGGCATGTTTTTCATGATCGCTGCTTGCTCCGCTGGCTCCGACGCTGTGCCAACTGTCGATCGCCATATTCTTGCCCATTGTGCCGCAGCGTCGTATCTCCAACTTCAGAGATAGATGATGAATAG 714 0.4188 MEFTSSSLQITPIEDPSIPQEFYFDNCFSIIFNCTKKLIQIIERSNPTPEVHFSSTTTTATEAILVPCTPLTNLSREDTILLHEIFSSLPVSPEVLDQILPDIGETARRILSNETCDSNTREMVVNLHVTSYIVVQDSDIYNDDLCQNFFERLQSVNLLERSKTDEQDDDAECAICLEKFDDGNEDSSVEIVRTNCWHVFHDRCLLRWLRRCANCRSPYSCPLCRSVVSPTSEIDDE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03539 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 231 IPR013083 -
Aip06g03539 237 CDD RING-H2 173 225 - -
Aip06g03539 237 SMART ring_2 173 224 IPR001841 -
Aip06g03539 237 PANTHER RING ZINC FINGER PROTEIN-RELATED 105 233 - -
Aip06g03539 237 SUPERFAMILY RING/U-box 160 230 - -
Aip06g03539 237 Pfam Ring finger domain 172 225 IPR001841 -
Aip06g03539 237 ProSiteProfiles Zinc finger RING-type profile. 173 225 IPR001841 -
Aip06g03539 237 PANTHER RING ZINC FINGER PROTEIN-RELATED 105 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03539 Aip-Chr6 132812812 132813525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03539 158 226 C3H Transcription Factor Family AT4G12190 41.096 4.24e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03539 - - adu:110273516 298.901