Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03538 ATGGAATTCCCCTATTCTTCTTTGCAAATCACTCCCATTGAAGAAGAGTTTGATTTGGGTGATTGCTTCTCCATCATCTTCAATTGCACCAAAAAATTGATCCAAATTATTGAAAGCTCAAACCCAGGTCCTGAGGTTCAGTCTTCTTCTACTACAAGTACAGCCACGGAAGCAATCTTGGTTCCTTCAGACATCCTATGGAGTGGTACTCCACTCACAGAGCTCAGCAGAGAAGACACAATCTTGTTACATGAAATCTGTTCTTCACTAAGTGTGTCTCCTGAGCTATTAGACCAAATTTTACCTGACATAGTCGAAACTGCAAGAAGGTGTGACTCCAACACGCGAGAGATTGTTGTGAACCTTCACGTTACCTCGTACAATGTTGTTCAAGATTCTGATGAGCAAGATGATGATGCTGAATGCGCCATATGCTTGGAGAAGTTTGACCATGGTAATGAAGATTCAAGCGTAGAAATTGTTCGTACAAATTGCAAGCATGTTTTTCATGATCGCTGCTTGCTCCCCTGGCTCCGACGCTGTGCCAACTGTCAGTCGCCATATTCTTGTCCATTGTGCCGCAGCATCCTCATATTTCCAACTTCACAGATAGATGATGAATAG 624 0.4279 MEFPYSSLQITPIEEEFDLGDCFSIIFNCTKKLIQIIESSNPGPEVQSSSTTSTATEAILVPSDILWSGTPLTELSREDTILLHEICSSLSVSPELLDQILPDIVETARRCDSNTREIVVNLHVTSYNVVQDSDEQDDDAECAICLEKFDHGNEDSSVEIVRTNCKHVFHDRCLLPWLRRCANCQSPYSCPLCRSILIFPTSQIDDE 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03538 207 Pfam Ring finger domain 141 194 IPR001841 -
Aip06g03538 207 ProSiteProfiles Zinc finger RING-type profile. 142 194 IPR001841 -
Aip06g03538 207 SUPERFAMILY RING/U-box 130 202 - -
Aip06g03538 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 198 IPR013083 -
Aip06g03538 207 PANTHER RING ZINC FINGER PROTEIN-RELATED 110 202 - -
Aip06g03538 207 SMART ring_2 142 193 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03538 Aip-Chr6 132807672 132808295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03538 131 203 C3H Transcription Factor Family AT3G58720 34.247 1.08e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03538 - K11982 adu:107495458 338.576