Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03524 ATGGAGGAAGAACCTGATACCTACAATCCTCGTACCGTCGAAGAGGTATTCCGTGATTTCAAGTCTCGCCGTACTGCTTTGATCAAAGCCCTCACCACTGATGCTGAAGAGTTCTTCAAGCAGTGTGATCCCGAAAAGGACAATCTTTGCCTGTATGGATTTCCTACCGAGGAGTGGGAAGTTAATCTGCCTGTTGAGGAGGTGCCTCCAGAGATTCCGGAGCCAACATTGGGTATTAACTTTGCCAGAGATGGGCTTGATAAACAGGAATGGCTATCTTTGGTTGCTGCTCATAGTGATGCTTGGATACTCGGTGTGGCTTTTTATTTTGGTGCTAGAGTTGGATTTGACAGGGCTGATAGGAAGAGACTATTTACTATGATAAATGATCTTCCAACCATATTTGAGGTTGTTACAGGAATGGGAAAGACACCAGCTTCTAATCATAGCAGTAACAAATCTAAATCAAACTCAAAGAAAGGTTCCGAGTCTAAGCCGAAGAATTCTAAGGCAACACAATCAAAGGACAAGGATGGTGAAGAACAGGGAGGAGACGTTCCTTGTGGGGCATGTGGAGAGAGCTATGATGATGGGTTCTGGATTTGCTGCGACATATGCGAGAAGTGGTTCCATGGAAAGTGTGTGAAGATTACTCCTGCAAGGGCTGAACACATCAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGACAGTAA 723 0.4481 MEEEPDTYNPRTVEEVFRDFKSRRTALIKALTTDAEEFFKQCDPEKDNLCLYGFPTEEWEVNLPVEEVPPEIPEPTLGINFARDGLDKQEWLSLVAAHSDAWILGVAFYFGARVGFDRADRKRLFTMINDLPTIFEVVTGMGKTPASNHSSNKSKSNSKKGSESKPKNSKATQSKDKDGEEQGGDVPCGACGESYDDGFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03524 240 MobiDBLite consensus disorder prediction 156 183 - -
Aip06g03524 240 Pfam PHD-finger 188 236 IPR019787 -
Aip06g03524 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 235 IPR013083 -
Aip06g03524 240 MobiDBLite consensus disorder prediction 142 184 - -
Aip06g03524 240 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 5 239 - -
Aip06g03524 240 PANTHER CPG BINDING PROTEIN 5 239 IPR045104 GO:0006355|GO:0042393
Aip06g03524 240 ProSitePatterns Zinc finger PHD-type signature. 188 233 IPR019786 -
Aip06g03524 240 SMART PHD_3 187 234 IPR001965 -
Aip06g03524 240 Pfam Alfin 12 140 IPR021998 GO:0006355|GO:0042393
Aip06g03524 240 ProSiteProfiles Zinc finger PHD-type profile. 185 236 IPR019787 -
Aip06g03524 240 SUPERFAMILY FYVE/PHD zinc finger 178 237 IPR011011 -
Aip06g03524 240 CDD PHD_AL_plant 187 236 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03524 Aip-Chr6 132510969 132516887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03524 1 239 Alfin-like Transcription Factor Family AT3G42790 69.200 1.02e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aip06g03524 Alfin 5.2e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03524 - - dzi:111285222 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03524 06 132510969 132516887 Aip06g03524 06 132510969 132516887 ECH