LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip06g03520	ATGAAAAAGCTGAAGAAATCTGAAATGCTCAAGAAAGGCCAGGTGGAACATGTTAGAGCTGAGAGGAACTTGCTGGCTGAAGTAGCCAGTCATTGCATCGTGAAACTTTACTACTCATTTCAAGATGCCGAGTACTTGTATTTAATTATGGAGTATCTGCCTGGGGGTGATATGATGACTCTTCTAATTAGGGAAGAAACCTTAAGTGAAGATATTGCTAAATTTTACATTGCACAAAGTGTTCTAGCCATAGAGTCTATTCATAGGCATGGTTACATTCACAGAGATATAAAACCTGATAACCTACTCTTGGACAAAAATGGTCACATGAAGCTCTCAGATTTTGGCCTCTGTAAGCCTCTTGACTGTACCACCTTGTATACACTGCATGAAAATCAGGTCATGGATGACAGAAATTTAGCAGAGCCAATGGATATTGATGGATCTATTCCTGGCATGGATAAGCATACCAGTTGGAGAAATCCACGTGAGCAGCTTGAGCATTGGCAGATGAACAGGAGAAAGTTGGCCTTTTCTACAGTGGGAACACCAGACTACATTGCTCCCGAAGTACTTCTGAAGAAAGGATATGGAATGGAATGTGACTGGTGGTCACTGGGAGCAATAATGTATGAAATGCTAGTTGGTTACCCTCCATTTTACTCGGAAAACCCTATGACTACCTGCAGAAAGATTGTTCATTGGAGAAATTTCTTAAGGTTTTCAGAAGATGCACAGTTGTCTCCAGAAGCTAAGGATCTAATCTGCAGATTGATGTGTGATGTTGACCATAGGTTAGGTACTCGAGGGGCGCATGAAATCAAGGCTCATCCTTGGTTCAATGGTGTAGAGTGGGATAAACTGTATGAAATGGAGGCAGCATTCAAACCACAAGTTGTTGGCGAGCTAGATACTCAGAACTTCATGAAATTTGATGAAGTTGATCCACCAACAAACGAAAGGCTTGGATCGGGAACCTCCCGGAAGATGCCCAAAGATCTAAACTTTGTTGGTTACACTTACAAGAACTTCGACGCTGTAAAAGGGCTGTGTCAAGGAGAGTCCATGCAAGAAATTTCTTCTAAATGGCCAGTTGAGGAAACGGGATTGCAAATGCTTGCATCATCCGGTGATCCCATGTTACCATAG	1149	0.4212	MKKLKKSEMLKKGQVEHVRAERNLLAEVASHCIVKLYYSFQDAEYLYLIMEYLPGGDMMTLLIREETLSEDIAKFYIAQSVLAIESIHRHGYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLYTLHENQVMDDRNLAEPMDIDGSIPGMDKHTSWRNPREQLEHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSENPMTTCRKIVHWRNFLRFSEDAQLSPEAKDLICRLMCDVDHRLGTRGAHEIKAHPWFNGVEWDKLYEMEAAFKPQVVGELDTQNFMKFDEVDPPTNERLGSGTSRKMPKDLNFVGYTYKNFDAVKGLCQGESMQEISSKWPVEETGLQMLASSGDPMLP	382

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip06g03520	382	ProSiteProfiles	AGC-kinase C-terminal domain profile.	281	351	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Aip06g03520	382	CDD	STKc_NDR_like	1	342	-	-
	Aip06g03520	382	Gene3D	Transferase(Phosphotransferase) domain 1	179	298	-	-
	Aip06g03520	382	Gene3D	Transferase(Phosphotransferase) domain 1	57	124	-	-
	Aip06g03520	382	PANTHER	SERINE/THREONINE-PROTEIN KINASE	1	361	-	-
	Aip06g03520	382	Gene3D	Phosphorylase Kinase; domain 1	1	56	-	-
	Aip06g03520	382	Gene3D	Phosphorylase Kinase; domain 1	299	309	-	-
	Aip06g03520	382	ProSiteProfiles	Protein kinase domain profile.	1	280	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip06g03520	382	SUPERFAMILY	Protein kinase-like (PK-like)	1	321	IPR011009	-
	Aip06g03520	382	Pfam	Protein kinase domain	172	280	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip06g03520	382	Pfam	Protein kinase domain	1	123	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aip06g03520	382	Pfam	Protein kinase C terminal domain	301	341	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Aip06g03520	382	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	92	104	IPR008271	GO:0004672\|GO:0006468
	Aip06g03520	382	SMART	pkinase_C_6	281	343	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Aip06g03520	382	PANTHER	AGC (CAMP-DEPENDENT, CGMP-DEPENDENT AND PROTEIN KINASE C) KINASE FAMILY PROTEIN	1	361	-	-
	Aip06g03520	382	SMART	serkin_6	1	280	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip06g03520	Aip-Chr6	132453077	132460811	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip06g03520	1	381	AGC Kinase Gene Family	AT4G33080	73.590	0.0	596

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Aip06g03520		Pkinase	1.5e-32	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip06g03520	K08790		-	gmx:100815717	656.366

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip06g03520	06	132453077	132460811	Aip06g03520	06	132453077	132460811	ECH
	Aip06g03520	06	132453077	132460811	Aip07g03414	07	123874781	123880829	ECH