Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03509 ATGTCTACTACCATGACTACTACACCTAACATTGATTCAACCTTGCAAAACTCTACTTTGAACAGAGTAGTAGATTCTAGTTGCAAGATGTACAAAGGTGTGAGGAAGAGGAAATGGGGCAAATGGGTATCGGAGATTAGGCTTCCCAACAGCCGAGAACGGATATGGTTGGGTTCTTATGACACCCAACAAAAGGCGGCTAGAGCCTTCGACGCCGCCCTCTACTGCCTTCGCGGCCGCCACGCCAGTTTCAATTTCCCCGACACGCCTCTTCATTTGGAGATCAACAATGTAAGTCACTACCATTCTCTCTCCCACCATGAAATTCAACAAGTTGCATCCAAATTCGCCAATAATTTTGATGCTGAGGAAGAAGAGGAACCGTCATCACAAAATGGTGCTAATAGTGCAAGCTCCGTGTGTGATTATGATGGGAGTAATAATAATAATAATAACGACGACAATACTAATAATAACGTGCAAGTGGACCATGGGGACATGGATTGGACATTTTTGAACGTGTTGGATGATCAAAATGATTCCAATTTTGATAACACTATTGGCTATGATTTTGGCCTCTACTATGGAGGGATAGATAAGATAAGAGAGATTCGCCAGAAATATGATATGGTGACCTACCTGTTGGAGTATATTGACTATCCTGACCAAATTCCATTTGGCGAGGGGATGTCTGATGTAGCTTCAAGCAGGGACCTGCGCCTTTTATTGGATTGGTGTCCGGAAAAGGGTTGGACAGTGCCTATGCCCACTGATTATCTGTTTTATAATGGAGCCTTTAGGTTTGTTCAAGTTCAGTATATGAGCTTTCTGCATAATTGGTTTCTAGAATGA 852 0.4272 MSTTMTTTPNIDSTLQNSTLNRVVDSSCKMYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQQKAARAFDAALYCLRGRHASFNFPDTPLHLEINNVSHYHSLSHHEIQQVASKFANNFDAEEEEEPSSQNGANSASSVCDYDGSNNNNNNDDNTNNNVQVDHGDMDWTFLNVLDDQNDSNFDNTIGYDFGLYYGGIDKIREIRQKYDMVTYLLEYIDYPDQIPFGEGMSDVASSRDLRLLLDWCPEKGWTVPMPTDYLFYNGAFRFVQVQYMSFLHNWFLE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03509 283 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Aip06g03509 283 MobiDBLite consensus disorder prediction 121 160 - -
Aip06g03509 283 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Aip06g03509 283 Gene3D AP2/ERF domain 29 88 IPR036955 GO:0003700|GO:0006355
Aip06g03509 283 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Aip06g03509 283 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Aip06g03509 283 Pfam AP2 domain 31 79 IPR001471 GO:0003700|GO:0006355
Aip06g03509 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 225 - -
Aip06g03509 283 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF016 26 225 - -
Aip06g03509 283 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Aip06g03509 283 MobiDBLite consensus disorder prediction 129 160 - -
Aip06g03509 283 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03509 Aip-Chr6 132305380 132308156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03509 31 144 AP2-EREBP Transcription Factor Family AT1G19210 59.649 1.47e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g03509 AP2 1.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03509 - - gmx:112999363 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03509 06 132305380 132308156 Aip06g03509 06 132305380 132308156 ECH
Aip06g03509 06 132305380 132308156 Aip10g02515 10 111728703 111729502 ECH