Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03500 ATGGGTTGTGAGATGGAATTGGAGAGTGAATGTATTGAGGACATGGAAGTTGAAGTCCTGCCTTCAATGTGGCCGGAAGATATCGGAACAGACGCCGGAAAGCAGTTCAATATAGAGAAGCCTGGCAGGGATCAAGACATGTTGGAAGAAGTTACAATCATGGAGGAACCAACCATAGCTGATTTCCAGCGATTAATGGAGCTAACTAACTATACAGACAGAGGTTCTTCACAATTGGCCTACTTAATGAAACATTGGGAGTATAAGCAGGCCAACGCCGTTCGCCTTCTTAGAGAAGAACTCGACAACTTGAGCAGGCAAAGGCAGGAAGTTGAGCAAAGGAGGCTGGAGATATTGCAAGAGAATCGATTCGAGGAAGACTATGGAGATGATAAGAGGCCGGTTTCTATATTGGATGAAGTTTATTACACTTGGCAGGATCTGCCAAGCCGGAAAAGTGATGTTGTTGTGCAGAACAAGAGGATTGAGATTGATGCAGAGTATGATACTGTTGTATACTGGAAGCAGCGCGCGCTGCAGCTGGAAAAACAGTTGGAGGCGAGTATGCAGCGCGAGCAGACGCTTATGGATAAGTTGCAAGAAAGCATTAAGACTATTGAGAGGCAGTCCTCGCCGGTTGAAGAGTTGTCGCAGATTCTGAAGAGAGCTGATAATTTCTTGCATTTTATACTTCAAAATGCACCTGTTGTCATTGGTCACCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCACTATCCAAGATTGCAAGAGGAGGACATCATAGGAAAAACAGATGTCGAAATTTTCACAGGTTCCGGTGTAAAAGAATCTCAAGATTTTAAGAGAGAAGTTATGGAGAAAGGATTACCTGCAAAAAAGGAAATCACATTCGAGACAGATCTATTCGGGTCGAAAACATTCTTGATATATGTAGAACCTGTGTTTAGCAAGGCAGGTGAAACAATAGGAATAAATTACATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCGAAGCTTCGGGAAGAGATTGCTGTTCAGAAAGCAAAGGAGACTGAACTGAATAAAACCATTCATATTACAGAGGAGACTATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCACCGTTGTCCGGGGTTGTGAGCATGGCTGAGATTCTTTCTACGACAAAACTTGATCGCGAGCAGAGACAACTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTCATAAATGACATTCTTGATCTTTCCAAGGTTGAGTCAGGAGCTATGAAATTGGAAGCCACGAAATTCCGGCCGAGAGAGGTAGTAAAGCATGTACTTCAAACAGCAGCTGCATCATTGCAGAAAATGCTAACCTTAGAAGGGAACGTGGCAGATGACATACCTATTGAGGTCATTGGAGATGTGTTAAGAATTCGTCAGATTCTCACAAATTTAGTCAGCAATGCTGTGAAGTTTACACATGAAGGCAAAGTTGGAATAAACCTTTATGTTGTGACAGAGCCACCATTTGCCAAAACAGAGGAATGCAATCAAAAGATGAACTCAGAACAATCAACAACTTGTTCAAATGGAGTGAAGGATCATAGATATCCATCAACACTAGCTAAGAGTGGCAGTGATCAAAATCATCATGGCAGTGATCACGCGTTTAACAACGAATTTCGATCTTCAGTTAAGAGTGATTACTCAATGAATGGTGGTGACACTAAGGAGGAAAATCACTCAACTGAAACAACAGTGTGGATTCGTTGCGATGTGTATGACACTGGAATTGGAATACCAGAAAAGGCCATACCTACTTTATTCAAAAGATACATGCAAGTCAGTGCAGATCACGCTCGAAAGTATGGAGGCACAGGACTCGGATTAGCAATATGCAAACAACTGGTTGAGTTAATGGGAGGTCGTCTAACAGTATCAAGCAAAGAACACGTTGGATCTACCTTCACATTCATACTTCCGTACAAAGTTTCAATTGCTTCTGATGAAAACTCCGACGACACCGACGAACTCTCCGATGTGGACAACAATGAAGCCGTTTCCGACGATTTAACAGAAGGCTTCTTCCAATTCCAACCCCGCACTTTAGGATCTCTCTTCTCTTCCAATGGATCCACAAGGCGAACCTCGCACAAGTTCAACGGATTTCCGCCCAATCCTTTCTCATTGCCATCTCCAAACGCCATCGCTTCCAAAGCGATAACGAATTCCGTTGAAGATTCATCTTCCGTTGTTGTTGATGCTTCGGATCTGACAGAATCAACGAGTTCATCGACGACCGAAGAAAAAGATCGTCGTGAACATTCAGCCAAATCGCGGCACGAGCCTTCGTCACATAGTAACGGTTGTGATGATTCTTCGAAACAAATGAATGAATCAAGAAAGTCATCGTGTGAGGGTTTGATGAAGAAGGAAGATGCGAATTCGCAATGTGTTACTAGCAGCAGTGCATCGCCGACGGAAGAGACTAAAGATTCTTCTAAATTGAAGCCTAAGATTCTTCTTGTTGAAGATAACAAGATCAATGTGATGGTGACACAGTCAATGATGAAGAGGTTAGGGTATAGCATGGATGTTGTTAACAATGGAGTGGAAGCCGTTCGTGCCGTTCAGCGTCACACTTATGACATCATTCTCATGGACGTTTTCATGCCAGTTATGAACGGTCTTCAGACGACGAAACTGATTCGATCTTATGAGGAAACTGGAAACTGGGATGCTGCAAAAAATTCTGGAATTGAACAAATACAACAAATTTCAGATTATGAATGTTGTGTACCACCTAGAAAGCGGATCCACATTATTGCGATGACAGCAAACACAGTAACAGAGAGTGCAGAGGAATGTTATGCAAATGATGAATGGTCTTTGCAAGAGATAGTGAGTTTACTGAAGGGTCTAGGCTACAAGGGTTATGCGAAGATATGGTGGAACGAACCTGGAATGGAGTTGAAGTTAGGTCTGAAAGAGTTGAAGTCAGATGGGGATGCTGTTAGAATGGCTAGTGCTTTAGTTACTGATTCTGTGAAGCATGGTATAGTGTATGCTGTTGATGGTTACAGAGAAGGTAATGGGGTTGAAATCACATCAATGGATCCAGATTATGTCCCAGATGAAGGCGAAGATAGTGGACTGATAGAAGTAGAAGTCGATGCTGAGTCAGAACCCTCTACTGAGGAGGATAGGTTTGATGACAGTACTGATGATGGTGAACATGAGGATTACTTTGGGTTCGATGTAGAGAATGGTGTTGATGGTGGACAATCAAATGCGTTTGGTGGGTTCAATGGCCCGCTAAATCAAGAAGCCACAACAGATAAGGGTGCTGAGGATAATGAAGCTCCTGGAGAGATGGATGAAGAAATTGGAGACATTTCGGATGGTTATGAAACTGAAGACATAGATAGTTACGAGGGAGATTCTGATGATATGATTAAGAAAAAAAGGTTTCCTAAGTATGATGAGGCAGAAATGTATAGAGAGTATGAGTTTAAGGTTGGGTTGGAGTTCAAAACACTGTCTCAGTTTAAAGATGCAATTAAGGAGCATGCCTTATTGAATGGGAGAGACGTTAGGTATAAGAAGAACGACAAGTTGAGGTGCAGGGTAGTGTGTAAGGGACAAAAAGAAAAGTGCAAGTGGATTTGCTTTGCAAGTAAGGACAAGTATATAGCAAATGTTAGTGTTGGAAAGGCTTACTGGGCAAGAAGAAAAGCAAGGGAAGAAGTACACGGAAGGGCCATACTACAATATGCCAAATTGAGGGATTATTGTGCTGAGATTTTAAGGGCAAATCCGGGGTCCAAGCTTAGTATTGTTGTAAATAGGCCATCTTTAACACACCAACCGCGATTCATGAGGATGTACATGTGCCTTGATTCAGTGAAGCAGGGCTTCTTGGCTGGTTGTAGGCCGATCATAGGAGTGGATGGGTGTCACTTGAAAGGGGACCACAGTCAGCAGCTACTAGTTGCAGTAAGGAGGGATCCTAATGACAATTATTTTCTAATTGCGGTTGCAGCAGTGGAGGCgaaaacaaaggacagctggggatggttccttgatctgttgctggatgatattggtgaatcaagaagatggGGTTTGATGCAAGTTTTTGCTGAGATGGAACCTTCTATTGAGCATAGATTATGTTTAAGGCATCTCTATGCGAACTGTAAGAAGGCATATGGTGGAGGGACAGTTTTGAGGGATCTAATCCTATCCATTGCTAAAGCTACATATGTGGAAGAGTGGGAGCGAAGAATGAATCTGCTGAAGGAGAAAAATAGGGACTGTTATGATAAACTGATGGGAGTGGACCCAAAGTTGTGGACAAAGAGCCATTTCACGTTTATGGCAAAGAGTGATATGCTAATGAATAATATATCAGAGGCTTTCAATGGCAGGATTCTTGAGGCTAGAGACAAGCCCATTCTGACGATGTTTGAGTGGATCAGATGCTACTGGATGTCAAGATTTGCAGAAAAGAAGAAGAAGGCTGAGAAGTATGAAGGATCCATTCTGCCTAAACCAAAAAAGAGGTTGGATCTCATTGCAACAAGAAGTATGGAATGGCAAGCTAGATGGGCAGGTCAGCTGAAGTTTGAGGTACATCACAAAAATAGGATGATCATGGAAAGTTTTGTGGTGGATCTGTTAGCTGGTACTTGCAGCTGTCGATTTTGGGGTTTGAGTGGTATGCCATGCCCACATGCGTGCAGTGCCATCTTTGAAAAGGGTGATAATCCTGAAGAGTATTGCAACAATTACTATAGTCCAGCAGCATACCTTGCAACATATGGAAAATCAATTGCTCCAATTAATGGAGAGAACATGTGGCCGAAAGTGAACTGTGATACCATCATACCCCCAGTTTTCAGGGTTAAACTTGGTCGGCCAAGAATGGTGCGGATTAGAGAACCGGATGAAAGTAGATCTCAAACGAAGTACAGAAGGACGGGTACCTCTGTGACTTGCAGCAATTGCGGCCAGTATGGACACAACAGGAGGCATTGCCCAAATCCTATTGTCTCAGCTCCTGAACCTGCTGCTGCTGCATCTGATGTTGCAACTGACTCAGCTACACCTGGAAATAATGCACATGATGCTGGATCTGCTGCAAGGGGGAGAGGCAAAGGAAGGGGTGCGGGACTGGGTAGAGGAAGGGGCAAAGGAAGAGGAACTGTTGTCACAGCCTCTGCACCAACTACTGCTGCTGCTGAATCTGCTGCTACGAATGGGACTGCTGCAAGGGGGAGAGGCAGAGGGAGGGGTGTGGGACTTAGTAGAGGAAAAGCAACTAGTATCACAGCCCCTGCACCAAATACTCTTGCTGCTGAATTTGGATCTGCAACTGTGTCACCCCTTACTGGATCATGTTCTGCAAACGACTCACCCCTTGCTGGATCTGGTTCACCTGATACTGGAGCTGCTTCAAATCCTCCTCATACACCAGCAACTCAACCAACTCCCTTCATTGAACCACTCATTCAGCAGACTCCACAAGTGGCACCAGTTACACAGCCTTTGCCTAAGACTAAGTCTTTTGGGATGAGAAGAAGTGAAAGATTGAAGATGGGGATAAGAAAGGGAGCAGCCAAACCTGCTGAATACATAGACCTCACAGATGATTGA 5688 0.4297 MGCEMELESECIEDMEVEVLPSMWPEDIGTDAGKQFNIEKPGRDQDMLEEVTIMEEPTIADFQRLMELTNYTDRGSSQLAYLMKHWEYKQANAVRLLREELDNLSRQRQEVEQRRLEILQENRFEEDYGDDKRPVSILDEVYYTWQDLPSRKSDVVVQNKRIEIDAEYDTVVYWKQRALQLEKQLEASMQREQTLMDKLQESIKTIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHYPRLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGLPAKKEITFETDLFGSKTFLIYVEPVFSKAGETIGINYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVKHVLQTAAASLQKMLTLEGNVADDIPIEVIGDVLRIRQILTNLVSNAVKFTHEGKVGINLYVVTEPPFAKTEECNQKMNSEQSTTCSNGVKDHRYPSTLAKSGSDQNHHGSDHAFNNEFRSSVKSDYSMNGGDTKEENHSTETTVWIRCDVYDTGIGIPEKAIPTLFKRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVSSKEHVGSTFTFILPYKVSIASDENSDDTDELSDVDNNEAVSDDLTEGFFQFQPRTLGSLFSSNGSTRRTSHKFNGFPPNPFSLPSPNAIASKAITNSVEDSSSVVVDASDLTESTSSSTTEEKDRREHSAKSRHEPSSHSNGCDDSSKQMNESRKSSCEGLMKKEDANSQCVTSSSASPTEETKDSSKLKPKILLVEDNKINVMVTQSMMKRLGYSMDVVNNGVEAVRAVQRHTYDIILMDVFMPVMNGLQTTKLIRSYEETGNWDAAKNSGIEQIQQISDYECCVPPRKRIHIIAMTANTVTESAEECYANDEWSLQEIVSLLKGLGYKGYAKIWWNEPGMELKLGLKELKSDGDAVRMASALVTDSVKHGIVYAVDGYREGNGVEITSMDPDYVPDEGEDSGLIEVEVDAESEPSTEEDRFDDSTDDGEHEDYFGFDVENGVDGGQSNAFGGFNGPLNQEATTDKGAEDNEAPGEMDEEIGDISDGYETEDIDSYEGDSDDMIKKKRFPKYDEAEMYREYEFKVGLEFKTLSQFKDAIKEHALLNGRDVRYKKNDKLRCRVVCKGQKEKCKWICFASKDKYIANVSVGKAYWARRKAREEVHGRAILQYAKLRDYCAEILRANPGSKLSIVVNRPSLTHQPRFMRMYMCLDSVKQGFLAGCRPIIGVDGCHLKGDHSQQLLVAVRRDPNDNYFLIAVAAVEAKTKDSWGWFLDLLLDDIGESRRWGLMQVFAEMEPSIEHRLCLRHLYANCKKAYGGGTVLRDLILSIAKATYVEEWERRMNLLKEKNRDCYDKLMGVDPKLWTKSHFTFMAKSDMLMNNISEAFNGRILEARDKPILTMFEWIRCYWMSRFAEKKKKAEKYEGSILPKPKKRLDLIATRSMEWQARWAGQLKFEVHHKNRMIMESFVVDLLAGTCSCRFWGLSGMPCPHACSAIFEKGDNPEEYCNNYYSPAAYLATYGKSIAPINGENMWPKVNCDTIIPPVFRVKLGRPRMVRIREPDESRSQTKYRRTGTSVTCSNCGQYGHNRRHCPNPIVSAPEPAAAASDVATDSATPGNNAHDAGSAARGRGKGRGAGLGRGRGKGRGTVVTASAPTTAAAESAATNGTAARGRGRGRGVGLSRGKATSITAPAPNTLAAEFGSATVSPLTGSCSANDSPLAGSGSPDTGAASNPPHTPATQPTPFIEPLIQQTPQVAPVTQPLPKTKSFGMRRSERLKMGIRKGAAKPAEYIDLTDD 1895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03500 1895 ProSiteProfiles Zinc finger SWIM-type profile. 1566 1598 IPR007527 GO:0008270
Aip06g03500 1895 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 8 970 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 754 845 - -
Aip06g03500 1895 PRINTS Bacterial sensor protein C-terminal signature 658 671 IPR004358 GO:0016310|GO:0016772
Aip06g03500 1895 PRINTS Bacterial sensor protein C-terminal signature 634 652 IPR004358 GO:0016310|GO:0016772
Aip06g03500 1895 PRINTS Bacterial sensor protein C-terminal signature 599 613 IPR004358 GO:0016310|GO:0016772
Aip06g03500 1895 Coils Coil 182 209 - -
Aip06g03500 1895 CDD HATPase_EvgS-ArcB-TorS-like 488 671 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 1067 1091 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 1813 1895 - -
Aip06g03500 1895 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Aip06g03500 1895 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Aip06g03500 1895 Pfam Response regulator receiver domain 850 918 IPR001789 GO:0000160
Aip06g03500 1895 ProSiteProfiles Histidine kinase domain profile. 379 674 IPR005467 -
Aip06g03500 1895 SUPERFAMILY CheY-like 848 969 IPR011006 -
Aip06g03500 1895 Pfam MuDR family transposase 1180 1238 IPR004332 -
Aip06g03500 1895 ProSiteProfiles Zinc finger CCHC-type profile. 1677 1692 IPR001878 GO:0003676|GO:0008270
Aip06g03500 1895 MobiDBLite consensus disorder prediction 526 544 - -
Aip06g03500 1895 Coils Coil 1433 1453 - -
Aip06g03500 1895 Gene3D - 842 971 - -
Aip06g03500 1895 SUPERFAMILY Retrovirus zinc finger-like domains 1659 1693 IPR036875 GO:0003676|GO:0008270
Aip06g03500 1895 SMART 26again6 1573 1600 IPR006564 GO:0008270
Aip06g03500 1895 Gene3D - 361 437 - -
Aip06g03500 1895 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 672 IPR036890 -
Aip06g03500 1895 Coils Coil 94 121 - -
Aip06g03500 1895 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 672 IPR003594 -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 1114 1140 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 1691 1787 - -
Aip06g03500 1895 Gene3D - 438 678 IPR036890 -
Aip06g03500 1895 Coils Coil 343 363 - -
Aip06g03500 1895 SMART HKATPase_4 483 674 IPR003594 -
Aip06g03500 1895 CDD REC_hyHK_CKI1_RcsC-like 850 968 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 824 839 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 717 733 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 717 738 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 526 568 - -
Aip06g03500 1895 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 8 970 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 774 798 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 1867 1895 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 1813 1834 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 805 819 - -
Aip06g03500 1895 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Aip06g03500 1895 SMART REC_2 848 981 IPR001789 GO:0000160
Aip06g03500 1895 ProSiteProfiles Response regulatory domain profile. 849 985 IPR001789 GO:0000160
Aip06g03500 1895 MobiDBLite consensus disorder prediction 1748 1762 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 1842 1860 - -
Aip06g03500 1895 MobiDBLite consensus disorder prediction 754 773 - -
Aip06g03500 1895 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Aip06g03500 1895 Gene3D PAS domain 214 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03500 Aip-Chr6 132123703 132135454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03500 1 969 Histidine Kinase Gene Family AT5G10720 59.011 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip06g03500 HATPase_c 2.4e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03500 - - gmx:100801640 1445.25