Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03495 ATGGTTGGAGAGCGCCTATCAATCGCTGTTGAGACAGAGACAAACAGGCAGCCGTGCAATGAGGCTAAGTTTGTTTTGGGACTAGCATGGCTGGATAAACTCGGGGTTATTTGGGCAAATTTTAAGGACTCTTGGATCGAGATCCTCAAGGGTAGAGAGGCTTTAACCTTGAAGGGTGACACTGGATTGTGTTATGATGGGTTAAGTTTACACTCAGTTTGGTCAGAAGGTGATAGAATTCATGCAACGATATGTAAGCCTCGGTTGGATTTGTTAAGGGAGAGGATAAAAGAGCATGCCGTGTATAGTATGCGGAATTTTATTGTGAAAATTAACAATGGGAAGGCAAGGACAACTGCTCATAAGTACAAGCTTAGCTTCTATACAAAGACAAAGGTGGAAGTTCTCCCCATCGAGACTTTTGCTTTTAACCCGTTCAAATTTCGCCCATTTGCTGAACTTGAGGCAAATTCTCCAATGGATGGAAATATGTTGTTTGATTACATAGGAGAGGTTGTTGGAAAAGAAGAGGCTATAGGGATGATTACACGCACGGGTGAAGAAAGCAAGCATATTGCACTACAGTTGGAAGACCTAAAGGAATTGGTGGACCAAGTGCTTCCACACCTCGAACGAGATGATGGGGAGCCTTTCATAATGGTTGTTCAGCTCTTTAAGTTGAATCCTCAATACTCTGTGGCAGATGAGATCAACGCAGGCATTGTCCCAATACGCACCATAGAGGAGGTTCTTAATATGACACAGATTGTGGGGAACATTGTGTCTTTAAAGGTTGGTAAAGATGACTGGTCATATACATCGTGTAAGACATGTCCAAAGAAAGTTCTAGAGAGCAAAGATAGGTATTGGTGTGATCATTGTAGGCGTGTAGGCTTCAAGGCTACGCTAAGGTATAGGCTGCAAGTAATCGTAACTGATGGAACCGATTGTATGAAGCTCTTTTTGTTGAACAAAGAAGCAGGGCAAATGGTGGGAAAGGCTGCTGAGAAAATTAAGGAGTTATGTCTCAACATCACCTACATGAATATTAATGTCGTGGAAGGGGTATACAGCATTTTAAAGATTTTAGATGATGAGTGCCTCATGTCTAGTTTTGGTTCTGCCAACTCTTCTTTCGATGCTTCTTGTTCTCAACATGTACCTAATACCCCTACAACTGAAACAGGTGATAATAGCAATAGACATAAGGCAGTTTCTCTGTCCAGGGATTCAGAAGTTGAGAGCAACGGTGACAAGAGGTCCTCCCCTAATACAGGTGATGGGTCCACAGCAAAAGCAGGTGTGTCTGTAGATGTGCAAGCATTAGCTAACAAGAGTTTTAAGAGGAATTGTGGGAAAAAAAAGCTGGATTGA 1374 0.4236 MVGERLSIAVETETNRQPCNEAKFVLGLAWLDKLGVIWANFKDSWIEILKGREALTLKGDTGLCYDGLSLHSVWSEGDRIHATICKPRLDLLRERIKEHAVYSMRNFIVKINNGKARTTAHKYKLSFYTKTKVEVLPIETFAFNPFKFRPFAELEANSPMDGNMLFDYIGEVVGKEEAIGMITRTGEESKHIALQLEDLKELVDQVLPHLERDDGEPFIMVVQLFKLNPQYSVADEINAGIVPIRTIEEVLNMTQIVGNIVSLKVGKDDWSYTSCKTCPKKVLESKDRYWCDHCRRVGFKATLRYRLQVIVTDGTDCMKLFLLNKEAGQMVGKAAEKIKELCLNITYMNINVVEGVYSILKILDDECLMSSFGSANSSFDASCSQHVPNTPTTETGDNSNRHKAVSLSRDSEVESNGDKRSSPNTGDGSTAKAGVSVDVQALANKSFKRNCGKKKLD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03495 457 MobiDBLite consensus disorder prediction 403 417 - -
Aip06g03495 457 MobiDBLite consensus disorder prediction 383 402 - -
Aip06g03495 457 CDD RPA1_DBD_C 255 341 IPR013955 -
Aip06g03495 457 Gene3D - 235 362 IPR012340 -
Aip06g03495 457 SUPERFAMILY Nucleic acid-binding proteins 77 137 IPR012340 -
Aip06g03495 457 MobiDBLite consensus disorder prediction 383 435 - -
Aip06g03495 457 Pfam Replication factor-A C terminal domain 264 341 IPR013955 -
Aip06g03495 457 Pfam Domain of unknown function DUF223 76 134 IPR003871 -
Aip06g03495 457 Gene3D - 67 135 IPR012340 -
Aip06g03495 457 SUPERFAMILY Nucleic acid-binding proteins 243 342 IPR012340 -
Aip06g03495 457 CDD RPA1_DBD_A_like 75 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03495 Aip-Chr6 132055921 132060163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03495 272 341 Core DNA Replication Machinery Family AT5G08020 39.437 3.81e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03495 - - adu:107463979 519.235