Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03430 ATGGATGAAAAAGATCATCATTTTCCTAAAGGAATGCGTGTTCTTGCTGTTGATGATGATCGAACATGTCTTATAGTTTTGAAGACTTTACTCCAAAAGTGTCATTATCAAGTAACAACCACAAACAATGCAATAACAGCATTGAAGCTATTGAGAGAGAAGAAGAACAAGTTTGATCTGGTAATCAGTGACGTTCACATGCCAGACATGGATGGTTTCAAGCTTCTTGAGCTTGTTGGACTTGAGATGGACTTACCTGTCATAATGTTATCTGTAGATGATGATCCAAGAGTGATGATGAAGGGAATCATGCATGGAGCATGTTTCTATCTGGTGAAACCTGTTAGAATTGAGGAGCTGAAGAATATTTGGCAGCATGAGGATGAAAATGACCATGACAACGGTGATGATCCGTCGGCGCAAAAGAAGCCTCGCGTGGTTTGGTCCGTCGACTTGCACCACAAATTTGTCACTGCCGTCGAGCAATTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGACTTAATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGTCATCTTCAGAAATATAGGCTTTATCTGAGAAGAGTGAGCAACATGTCAAACCAACAACACTCTAACATTGGATCAGCCTTCAGCAGTGCAGACACATCATATCTGAGAATGAATCCTCTAAGCGGAATTGGACAATTACAAACACTCAATAATAACTCTGGTTATGGCTTAAGATCTTTTTCACCTTCTAACATGCTTAATAGATTCAACACTCCTTCAGCCCTCAATGCTCATGGTTTCAATTCCAATGATACCCAATTTCAGTTCCCATCTTCCGGCTTGCTCGGCCGCGGCCGCAGCAATAACAATCAGACTTATCTCTCCGGAGGAGGACTTAATTCTGTTCCAAACTTGAGCACTATCTTTGATTCTAAACAGAGTTTTGTTAGACAGAAACCAAGCTCTCCCATTTTGGGAGTTTCCAACAATGGTTTGATCTTGGAACAGAATCATCAAGGTGGAATCTATGATAATATTCCAAATTCTGTAGGATCTTCTTCCCAAGAACAAATTTCATTCCCTTCTTTACTTGATCATCATCATGGTAATAGTTGCAACAATGATATTTGGTCAAATGAATGCAACACTTTGATGAATTCTTCAACTTTTCAAGGTGGGAATCTTAGTGGTGCTTCATCAATCACTTCACTCTCTAGCCAATCCCATGATTCATTCACTGATTTGAATTTCCAAGGAGTGAATTTCACCAACAATAACAATAGTAACAATGTGCAATTTCAAGGGTGGAATAGTAACAATAATAACAATAATCAGAATGGAAATTACCATGCATTGAGTGGCCTTATTGATCCATTTTCAAATTCAAGCTTCAACAGAAACTTGGATTTTGATTTTTGTGATGCATCGCAAATGAAGCATGATGGGGTTATTGATTTGACTGAAGATTCTTCACTGAAGCCACATCAGTTGTACAAGACTCGGAACACTCACATTTCTAATAATGCTGGTTCCTTGGAAGACTTTGTCAATGAAATTATGAAACAGAAACAAGACAAGATAAAATTACCAGAAGGAGACTTCTTGTGTGACAATTATTCTACTGGTGGAACATCTATGTGA 1647 0.3849 MDEKDHHFPKGMRVLAVDDDRTCLIVLKTLLQKCHYQVTTTNNAITALKLLREKKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSVDDDPRVMMKGIMHGACFYLVKPVRIEELKNIWQHEDENDHDNGDDPSAQKKPRVVWSVDLHHKFVTAVEQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLRRVSNMSNQQHSNIGSAFSSADTSYLRMNPLSGIGQLQTLNNNSGYGLRSFSPSNMLNRFNTPSALNAHGFNSNDTQFQFPSSGLLGRGRSNNNQTYLSGGGLNSVPNLSTIFDSKQSFVRQKPSSPILGVSNNGLILEQNHQGGIYDNIPNSVGSSSQEQISFPSLLDHHHGNSCNNDIWSNECNTLMNSSTFQGGNLSGASSITSLSSQSHDSFTDLNFQGVNFTNNNNSNNVQFQGWNSNNNNNNQNGNYHALSGLIDPFSNSSFNRNLDFDFCDASQMKHDGVIDLTEDSSLKPHQLYKTRNTHISNNAGSLEDFVNEIMKQKQDKIKLPEGDFLCDNYSTGGTSM 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03430 548 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 127 522 - -
Aip06g03430 548 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 8 126 - -
Aip06g03430 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 199 IPR017930 -
Aip06g03430 548 SUPERFAMILY CheY-like 10 126 IPR011006 -
Aip06g03430 548 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Aip06g03430 548 PANTHER TWO-COMPONENT RESPONSE REGULATOR 127 522 IPR045279 GO:0009736
Aip06g03430 548 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 126 IPR045279 GO:0009736
Aip06g03430 548 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 143 196 IPR006447 GO:0003677
Aip06g03430 548 Gene3D - 141 202 - -
Aip06g03430 548 PIRSF RR_ARR_type-B 127 545 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aip06g03430 548 PIRSF RR_ARR_type-B 1 126 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aip06g03430 548 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Aip06g03430 548 SUPERFAMILY Homeodomain-like 141 200 IPR009057 -
Aip06g03430 548 Pfam Myb-like DNA-binding domain 145 195 IPR001005 -
Aip06g03430 548 Gene3D - 11 140 - -
Aip06g03430 548 SMART REC_2 12 124 IPR001789 GO:0000160
Aip06g03430 548 CDD REC_typeB_ARR-like 14 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03430 Aip-Chr6 131247772 131251841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03430 7 271 Response Regulator Gene Family AT2G25180 52.366 1.78e-100 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aip06g03430 Response_reg 3.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03430 - K14491 adu:110273068 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03430 06 131247772 131251841 Aip06g03430 06 131247772 131251841 ECH