Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03427 ATGGAAACACTACTTCCTACCAACAAGAAACACTTCTTCTCTACTCCTCCAACTCCATGTACACCACAACACAAGAATCAACAATCTTTGCAAGACGAAGAAGCAGAAGAAAACGATACAAACATAGGTAATAACAATAATGCTTTGTTATTATTGGATTTGAATGTCTCCGGCAACCAAGACGATCTGGACGACGGATCGCCCGAGCTCAACCTCATAACTTGTTTGGATATGGATTCATTATCCAATAACAAAAATAATTCTCCATCAGAAGAAGAACCGTCATTATTACCAGACAAACCGAATTGCTTTGGTGACGGTTCATCTTCTTCCGACGTAGAAATGAGGGTTTTTTCTTGCAATTATTGCCAGAGAAAATTTTACAGTTCGCAAGCACTTGGCGGACACCAAAACGCTCACAAAAGGGAGCGATCGATAGCCAAGAGAGGCCACAGATTCGGGACGCAAATACTGTCCTCTACACCTGCCTTTGGAATGATTCCACTTCGCTATGCTGCCTCCGCCGCCAGCATAGCGTCTCTGCCGCTCCACGGCGGCGCGTGTGGCAACAGAGGACTCGGAATTCAAGCTCATGCAATGATCCACAAACCTTCACACAATGGACACCATCACGGTTGGTCAAGACCCCTTATTGATCCACAACCCGGTGTTGCAAGACTGGCTATGGCGGATTTTCATCGAACTTCGGCATTATCGGCGTCAAGAGGAAGCGTCGGAAGATTTGAAGTGATGAATTCAGCATCGCCAAATAAAGAAATCAGTGGGTTTTTTCTTAGTAGTGGAACTCATCGTCATCATCAAGATGAAATCAAGCACCTTGATTTGTCTCTCAAGCTTTAA 861 0.446 METLLPTNKKHFFSTPPTPCTPQHKNQQSLQDEEAEENDTNIGNNNNALLLLDLNVSGNQDDLDDGSPELNLITCLDMDSLSNNKNNSPSEEEPSLLPDKPNCFGDGSSSSDVEMRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGHRFGTQILSSTPAFGMIPLRYAASAASIASLPLHGGACGNRGLGIQAHAMIHKPSHNGHHHGWSRPLIDPQPGVARLAMADFHRTSALSASRGSVGRFEVMNSASPNKEISGFFLSSGTHRHHQDEIKHLDLSLKL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03427 286 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 286 IPR044246 GO:0009788
Aip06g03427 286 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 286 - -
Aip06g03427 286 Gene3D Classic Zinc Finger 106 163 - -
Aip06g03427 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Aip06g03427 286 MobiDBLite consensus disorder prediction 1 28 - -
Aip06g03427 286 MobiDBLite consensus disorder prediction 1 44 - -
Aip06g03427 286 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Aip06g03427 286 SUPERFAMILY beta-beta-alpha zinc fingers 116 145 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03427 Aip-Chr6 131207183 131208162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03427 35 286 C2H2 Transcription Factor Family AT5G10970 35.688 2.76e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip06g03427 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03427 - - gmx:100809569 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03427 06 131207183 131208162 Aip10g02418 10 109120374 109121557 PCT