Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip06g03424 ATGGCAAGATCACAACAGAGATACCGAGGTGTGAGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCACCCCATTTTGAAGACAAGGATATGGCTTGGAACATTTGAAACAGCAGAGGATGCTGCTAGAGCCTATGATGAAGCAGCTAGGCTTATGTGTGGTGCAAGAGCAAGAACCAATTTCCCTTTCAATCCTAACACTACCAACAACAATGTCTCTCAATCTTCTTCTTCAAAGCTTCTCTCACCAACTTTGACCGCAAAATTGCACAGATGCTACATGGCTTCTTTGCAATTAACTCGGCAACAAGATCCTCAAAGGGTAAATGATAATCATAATAATAGTAACTACTCCAAAGAACAAGTTAGTGAAAAGGGTGATTCAATTGTGTCATCAAAAAAGAGAACACATGATGAGGAGGAAGAGGTGAAACAAGATTCAGAGGCCAATTGGGTTGTCAAGAAAGTTAAGGGTATGGACCAAATTGGTCCACAGTTCAAGCCACTTGAAGAACATCACATTGACCAAATGATTGAGGAGCTTCTTCATTATGGCTCTATTGAACTTTGTTCTctcTTCCGCGCGCTCACCCATTCCCAAGCACCCAACTTCGCTTCCGTCCTCATAGTCGCCTTCTGCGAATTGGGTCATGTCCAAGAAGCTCTTTCGGTGTATAGAAACGTCTCTTCTTTGCCTCTCTTGAAGGCTCGCAACGTGCTTCTTCACGCCCTCGTCAACACCCACAGATTTGATTCACTGTCGGAGGTCTATGGGGACATAGTGTCGCGTGGATTCTCCCCTACCGTTGTGAGCTACGGCATTTTGATGCAGTGCTGTTGCAGCCAAGTTGATTCTGTTGGTGCACGCAAGCTATTTGATGAAATGCGCCACCGCAAAATTGAACCAACCGTTGTGGTTTACATTATTATGATCTGTGTTCTTTGCAACGAGGGTCGAATGGGAGATGCCGAGGGCGTCTTCCGTTtgatgagggaattcggagtggcgcctaatttgaaatttggtggctggtag 1041 0.4284 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPFNPNTTNNNVSQSSSSKLLSPTLTAKLHRCYMASLQLTRQQDPQRVNDNHNNSNYSKEQVSEKGDSIVSSKKRTHDEEEEVKQDSEANWVVKKVKGMDQIGPQFKPLEEHHIDQMIEELLHYGSIELCSLFRALTHSQAPNFASVLIVAFCELGHVQEALSVYRNVSSLPLLKARNVLLHALVNTHRFDSLSEVYGDIVSRGFSPTVVSYGILMQCCCSQVDSVGARKLFDEMRHRKIEPTVVVYIIMICVLCNEGRMGDAEGVFRLMREFGVAPNLKFGGW 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip06g03424 346 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Aip06g03424 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Aip06g03424 346 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Aip06g03424 346 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Aip06g03424 346 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Aip06g03424 346 CDD AP2 6 60 IPR001471 GO:0003700|GO:0006355
Aip06g03424 346 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Aip06g03424 346 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Aip06g03424 346 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Aip06g03424 346 MobiDBLite consensus disorder prediction 102 127 - -
Aip06g03424 346 TIGRFAM PPR: pentatricopeptide repeat domain 272 306 IPR002885 -
Aip06g03424 346 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Aip06g03424 346 Gene3D Tetratricopeptide repeat domain 164 286 IPR011990 GO:0005515
Aip06g03424 346 Gene3D Tetratricopeptide repeat domain 287 343 IPR011990 GO:0005515
Aip06g03424 346 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 195 - -
Aip06g03424 346 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Aip06g03424 346 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003 1 195 - -
Aip06g03424 346 Pfam PPR repeat 302 333 IPR002885 -
Aip06g03424 346 MobiDBLite consensus disorder prediction 102 148 - -
Aip06g03424 346 MobiDBLite consensus disorder prediction 128 148 - -
Aip06g03424 346 Pfam PPR repeat 272 301 IPR002885 -
Aip06g03424 346 Pfam PPR repeat 208 228 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip06g03424 Aip-Chr6 131143668 131146167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip06g03424 1 195 AP2-EREBP Transcription Factor Family AT5G25190 61.224 1.46e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip06g03424 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip06g03424 - - aip:107605402 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g03424 06 131143668 131146167 Aip10g02412 10 108896836 108899834 PCT